Balaenoptera acutorostrata scammoni (minke whale): 103004183
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Entry
103004183 CDS
T03086
Symbol
KDM2B
Name
(RefSeq) lysine (K)-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103004183 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bacu03000
]
103004183 (KDM2B)
04121 Ubiquitin system [BR:
bacu04121
]
103004183 (KDM2B)
03036 Chromosome and associated proteins [BR:
bacu03036
]
103004183 (KDM2B)
Enzymes [BR:
bacu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
103004183 (KDM2B)
Transcription factors [BR:
bacu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
103004183 (KDM2B)
Ubiquitin system [BR:
bacu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103004183 (KDM2B)
Chromosome and associated proteins [BR:
bacu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
103004183 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
103004183 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
AppA_SCHIC
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
103004183
NCBI-ProteinID:
XP_007189603
LinkDB
All DBs
Position
Un
AA seq
1108 aa
AA seq
DB search
MSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDR
VERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQ
PKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLIDAPRKPSIDGFSSDSWLEME
EESCEQQPQEEEKEEEGEEEEEGADKTPKAPTDGPASPTSTPSEDQETPGKKPKAPAMRF
LKRTLSNESEDSVKSATVPIDYPKTPTGSPATEVSAKWTHLTEFELKGLKALVEKLESLP
ENKKCVPEGIEDPQALLEGVKNVLKEHADDDPNLAITGVPVVAWPKKTPKNRAVGRPKGK
LGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM
RQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGV
VNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPARRRS
ECEEAPRRRSDEHPKKLPPDGILRRKSDDVHLRRKRKYEKPQELSGRKRASTLQTSPGSS
SHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRMALANKPLRR
FKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKRKVKMRRKRRLPNKELSK
ELSKELNQEIQKTESSLAHENHQPIKSEPESENEEPKRPLGLCERPHRFSKGPNGTPREL
RHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHRE
VWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVS
LDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKD
AQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYC
NHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTK
EGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaaggttgtttcactgacttccacatcgactttggaggcacttccgtttgg
taccatgttttccggggtgggaagatcttttggctgattcctccaaccttgcacaatttg
gcactgtacgaggagtgggtgctgtcaggcaaacagagcgacatcttcctgggagaccgt
gtggagcgatgccaaagaattgagctgaaacagggctacacgtttttcatcccttccggc
tggatccatgcagtctacacccccgtagactctctggtgttcggcggaaacattctgcac
agcttcaacgtgcccatgcagctgcggatctacgagatcgaggacagaacgcgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgccccaagaaagcccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagccccaggaggaggagaaggaggaggagggggaggaagag
gaggagggtgcagataagacgcccaaagctcccaccgatggccctgcctcgcccaccagc
accccctccgaggaccaggagacccccgggaagaagcccaaagcccctgccatgcggttc
ctcaaaaggactttgtcgaatgagtcagaagacagcgtgaagtctgccacagtgcccata
gactaccccaagacgcccaccggctctcccgccaccgaggtctctgccaaatggacccac
ctcaccgagtttgaactgaagggcctgaaagctctggtggagaaacttgaatccctcccg
gagaacaagaagtgtgttcctgagggcatcgaggacccccaggcactcctggagggtgtg
aagaatgtcctgaaggagcacgcagatgacgaccccaatctggccatcactggggtcccg
gtagtcgcttggccaaagaagactccaaagaaccgggccgtaggtcggcccaaggggaag
ctgggccccgcctccgcggtgaagttggccgccaaccggaccacggcgggagctcgccgg
cgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgcggagagtgccac
ttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagctgcatcatg
cggcagtgcatcgcgccagtgctgccccacaccgccgtgtgtctagtgtgtggcgaggca
ggaaaagaggacacagtggaagaggaagaaggcaagtttaacctcatgctcatggagtgc
tccatctgcaacgaaatcatccaccctggatgccttaagattaaggagtcagagggcgtg
gtcaacgatgagcttccaaactgctgggagtgtccaaagtgtaaccacgccggcaagacc
gggaaacaaaagcgtggccctggctttaagtacgcctcaaacctgcccggctccctgctc
aaggagcagaagatgaaccgcgacaacaaggagggccaggagcctgccaggcggaggagt
gagtgtgaggaggcgccccggcgcaggtcggacgagcaccccaagaagctgccccctgac
ggcatcctgcgccgaaagtcagacgatgtgcacctgaggaggaagcggaaatacgagaag
ccccaggagctgagtggacgcaagcgagcctcgacgcttcaaacgtcccccggttcctcc
tctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtggagatccagt
ctcacttacttccagcagcagctaaaacccggcaaagaagataagcttttcaggaaaaag
cggcggtcctggaagaacgctgaggaccgaatggctctggccaacaagcctctcaggcgc
ttcaagcaggagccggaggacgacctgcccgaggcgccccccaagacgagggagagcgac
cactcccgctccagctccccgaccgccggccccagcacggagggggcggagggccccgag
gagaagaggaaggtgaagatgcgccggaagcggcgactccccaacaaggagctgagcaag
gagctgagcaaggagctcaaccaggagatccagaagacggagagcagcctggcccacgag
aaccaccagcccatcaagtcggagcctgagagcgagaacgaggagcccaagcggcccctg
ggcctctgtgagcgccctcaccgcttcagcaaggggcccaacggcaccccccgggagctg
cggcaccagctggggcccggcctgcgcagcccgccccgagtcatctcccggccccctccc
tccgtgtccccgcccaagtgcatccagatggagcgacatgtgatccggccgccccccatc
agccccccgcccgactcgctgcccctggatgatggggcggcccacgttatgcacagggag
gtgtggatggccgtcttcagctacctcagccaccaagacctgtgtgtctgcatgcgggtc
tgcaggacctggaaccgctggtgctgtgataagcggttatggacccgcatcgacctgaac
cactgcaagtccatcacacccctgatgctgagcggcatcatccggcgacagcctgtctcc
ctggacctcagctggaccaatatctccaagaaacagctgagctggctcatcaaccgcttg
cctgggctccgagacttggtgctgtccggctgctcatggatcgcagtctcagccctctgt
agctccagttgtccgctgctccggaccctggatgtccagtgggtagaaggactaaaggac
gcccagatgcgggatctcctgtccccgcctacagataacaggccaggtcagatggacaat
cggagtaagctccggaacattgtggagctgcgtctggccggcctggacatcacagacgcc
tccctgcggcttatcattcgccacatgcccctgctctccaagctccaccttagttactgt
aaccacgtcactgaccagtccatcaacctgctcactgctgtgggcaccaccacccgagac
tccttaaccgaaatcaacctgtcagactgcaataaggtcactgaccagtgcctgtccttc
ttcaaacggtgtgggaatatctgtcatattgacctgaggtactgcaagcaagttaccaag
gaaggctgtgagcagttcatagctgaaatgtctgttagtgtccagttcgggcaagtggaa
gaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
