Bacillus sp. V3: I7V34_18520
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Entry
I7V34_18520 CDS
T11035
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bacv Bacillus sp. V3
Pathway
bacv03030
DNA replication
bacv03410
Base excision repair
bacv03420
Nucleotide excision repair
bacv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bacv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I7V34_18520 (ligA)
03410 Base excision repair
I7V34_18520 (ligA)
03420 Nucleotide excision repair
I7V34_18520 (ligA)
03430 Mismatch repair
I7V34_18520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bacv03032
]
I7V34_18520 (ligA)
03400 DNA repair and recombination proteins [BR:
bacv03400
]
I7V34_18520 (ligA)
Enzymes [BR:
bacv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I7V34_18520 (ligA)
DNA replication proteins [BR:
bacv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I7V34_18520 (ligA)
DNA repair and recombination proteins [BR:
bacv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I7V34_18520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I7V34_18520 (ligA)
MMR (mismatch excision repair)
DNA ligase
I7V34_18520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I7V34_18520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
HHH
5_3_exonuc
DUF1877
Motif
Other DBs
NCBI-ProteinID:
QTC41057
LinkDB
All DBs
Position
3719706..3721712
Genome browser
AA seq
668 aa
AA seq
DB search
MDRQSAEKRVHELHELLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQHPELRTADSP
SQRVGGTILDAFEKVEHRSQMLSLGNAFNEQDLRDFDRRVRQAVGDDFSYVCELKIDGLA
VSLRYENGIFVQGATRGDGSIGEDITANLKTIRSIPLKIKEPLSFEVRGEAFMPKRSFEA
LNKVKEEKGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYALADIGDTGIDSHSEGLN
RLDHLGFKTNPERKRCADIEEVLQYVESWTERRPDLSYDIDGIVIKVDSLDQQKALGTTA
KSPRWAIAFKFPAEEVVTILKDIELSVGRTGVVTPTAILDPVRVAGTTVQRASLHNEDLI
REKDIKIGDHVVIKKAGDIIPEVVNVLEDQRTGEEKEFSMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFREQLIVDVADLYKLERDQLLQL
ERMGEKSVDNLLQAIEASKSNSLEKLLFGLGIRHVGAKAAKTLAQEFDSMDKLMSVSKEE
LTNINEIGEKMGDAIVAYFENDEVKELVEELKEAGVNMVYKGPKPVSASEADSYFAGKTI
VLTGKIEQLSRNEAKEKIEMLGGKVTGSVSKKTDLVIAGEDAGSKLKKANELDIEVWDED
KLMEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgacaatcggctgaaaaacgcgtgcacgaactgcacgaacttttaaatcaatac
aattacgaataccatgtcctcgataaaccatcggtgcccgattccgaatatgaccagctg
ctgagggaactgatcgaactcgaggatcagcatcctgaactgagaacagcggactcccca
tcccaaagggtcggggggacgattctcgatgcatttgagaaagtggaacaccgcagtcag
atgctcagtctggggaatgccttcaatgaacaggatctccgtgatttcgaccgccgcgta
cgccaggctgtcggggatgatttctcgtatgtatgtgaactcaagatcgacggcctggcc
gtgtccctccgttatgaaaacgggatattcgtgcaaggagcgacacgcggggacggatcg
ataggggaggatatcacagccaacctgaagacgatccgttcaataccattgaaaatcaag
gaacccctttcgtttgaagtacgcggtgaagctttcatgccgaagcggtctttcgaagcg
ttgaataaagtgaaagaggaaaagggagaagaaccctttgcgaatccgcggaatgcagcg
gcgggatcactgcgtcagctagaccccaaaattgctgcatcccgaaatctggatattttc
ctgtatgccctggcagacatcggggatacaggtatagactctcacagcgaaggtctcaac
cggctggaccacctcgggttcaaaacgaatccggaacgaaagcgctgtgcagatatagag
gaagtccttcagtatgtggagagctggacggaaagacgtccggatctttcatatgacatc
gacggcatcgtcattaaggttgattcattggaccagcagaaagccctcggcacgacggcg
aaaagtccgcgctgggcaatcgcgttcaaattcccggctgaagaagtggtcacgatttta
aaagacatcgaactgagtgtcggacggaccggcgtggttacaccgaccgccatcctcgat
ccggtgagggttgcaggtacaaccgttcagcgggcgtccctgcataacgaagatctcatc
agggaaaaggatatcaaaatcggggatcatgttgtcattaagaaagcaggggacatcatc
cctgaggtcgtgaacgtgctggaggaccagagaacaggtgaagagaaggaattcagcatg
ccgacgcattgtccggaatgtgaaagcgagcttgtcaggctggaaggggaagtggcgctt
cgctgcatcaatccgaagtgtcctgcccagattcgtgaagggttgatccattttgtctcc
agaaatgcgatgaatatcgacggacttggtgagaaagtcatcagtcagctgttccgtgag
cagttaatcgtggatgtggctgatctgtacaaattggaacgggatcagctccttcagctt
gagaggatgggtgagaagtccgtcgataacctccttcaggcgattgaagcttcaaaatcg
aattccctcgagaaactgcttttcggactcgggatccgacatgtaggggccaaagcggcc
aagacccttgcccaagagttcgattcaatggacaagctgatgtcagtttctaaggaagag
ctgacgaatatcaacgaaatcggtgagaaaatgggcgatgcgatcgtcgcgtattttgaa
aacgatgaagtgaaagagctggtcgaagagctgaaggaagccggggtcaacatggtatat
aaaggtccaaagccagtttcggcaagtgaagctgattcttactttgcggggaaaaccatt
gtgttgacagggaaaatagaacaactgagccggaatgaagcaaaagagaaaattgaaatg
ctcggaggtaaagtgacaggaagcgtgagcaagaagacggaccttgtcattgccggtgaa
gatgcaggatcgaaacttaaaaaggcgaatgagcttgatatagaagtttgggatgaggac
aagctgatggaagaacttaaccgataa
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integrated database retrieval system
