Bacillus atrophaeus: BATR1942_00840
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Entry
BATR1942_00840 CDS
T01339
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bae
Bacillus atrophaeus
Pathway
bae03030
DNA replication
bae03410
Base excision repair
bae03420
Nucleotide excision repair
bae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BATR1942_00840 (ligA)
03410 Base excision repair
BATR1942_00840 (ligA)
03420 Nucleotide excision repair
BATR1942_00840 (ligA)
03430 Mismatch repair
BATR1942_00840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bae03032
]
BATR1942_00840 (ligA)
03400 DNA repair and recombination proteins [BR:
bae03400
]
BATR1942_00840 (ligA)
Enzymes [BR:
bae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BATR1942_00840 (ligA)
DNA replication proteins [BR:
bae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BATR1942_00840 (ligA)
DNA repair and recombination proteins [BR:
bae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BATR1942_00840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BATR1942_00840 (ligA)
MMR (mismatch excision repair)
DNA ligase
BATR1942_00840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BATR1942_00840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
zf-IS66
HHH_8
DUF4796_N
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ADP31128
LinkDB
All DBs
Position
181539..183545
Genome browser
AA seq
668 aa
AA seq
DB search
MDKEAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDLRTPDSP
TQRVGGAVIDAFQKVRHGTPMLSLGNAFNAEDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYENGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKRSFEA
LNEERLKKEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVDTQSQGLD
FLDEIGFKTNQERKKCGTIDEVIDMIEELQAKRADLPYEIDGIVVKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTTLLDIELNVGRTGVITPTAVLEPVKVAGTTVQRASLHNEDLI
REKDIRILDKVVIKKAGDIIPEVVNVLTEQRTGQEKEFNMPTTCPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFQEKLVRNVADLYKLTKERVIQL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLDHLKKANKEE
LLAIDEIGEKMADAVITYFQKEEMLELLDELEQLGVNTLYKGPKKVKVEDSDSYFAGKTI
VLTGKLEELSRNDAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAEELNIEVWNEE
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaagcagcgaaacgccgggcagaagacctgcgcagcacaatcaaccagtat
agctatgaatattacaccttagatgagccaagcgttccggattctgagtacgataaactg
atgcaggagcttctcgatttagaggaagaacatccggatctcagaacgccggattctccc
acgcagcgtgttggcggcgccgtgattgacgcttttcaaaaagtgcgtcacggcacaccg
atgctcagtctcggcaacgcatttaatgctgaggacctgcgtgatttcgaccgccgtgtc
cgtcaggccgtcggagacgatgtggcgtacaatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaaaacggctattttgtcagaggcgcgacaaggggagacggaaca
acgggcgaggatattacggagaatttgaagaccattcgcaatatcccgctgaagatgaaa
cgtaatctttccatagaagtgcgcggcgaagcctacatgccgaagcgttcgtttgaagcg
ctgaatgaagaacggctgaaaaaagaagaagaaccattcgccaatccgcgaaacgctgcc
gcgggatcactcagacagctcgatccgaaaattgcggcgaaacgaaatctcgatatcttc
gtctacagtatagcggagcttgacgaaatgggtgtggatacacaaagccaggggcttgat
tttctcgacgagatcggatttaagacaaaccaggaacgaaaaaaatgcggtaccatagat
gaagtcattgatatgatcgaagagctgcaagccaagcgtgccgacctgccgtacgaaatc
gacggcatcgtagtgaaagtggactcacttgatcagcaggaggagttaggctttacggcg
aaaagcccgcgctgggccattgcgtataaatttcctgccgaagaagtcgtcacaacgctg
cttgatattgaactgaacgtcggaagaacaggtgtcataacgccgactgcggtacttgag
cctgtaaaagttgcgggtacgaccgtccaaagagcatcccttcataacgaagatttaatt
agggaaaaagacatccgtattcttgataaggttgtgatcaaaaaggcgggcgacattatc
ccggaagtcgtgaatgtactgactgagcagcgcacagggcaagagaaagaatttaacatg
ccgacaacctgtccggagtgcggaagcgagcttgtgcgcatcgagggagaagtggccttg
cgctgcatcaatcctgaatgtcccgcgcaaatcagggaaggcttgattcattttgtctcg
cgtaatgccatgaacattgacggactgggagagcgtgtgatcacccagctgtttcaagag
aaactcgtccgcaatgtggcggatttgtataagctgacgaaagaacgggtcatccagctt
gaacggatgggtgaaaaatctaccgacaacctgatcagctccattcaaaaatcgaaggaa
aactcgttggagcgtctgttattcggccttggcatccgctttatcggctcaaaagccgcc
aaaacgcttgccatgcactttgaaagcttggatcatctgaaaaaagcgaacaaagaagag
ctgcttgcgattgatgaaatcggagaaaaaatggctgatgcagtgatcacatatttccaa
aaagaagaaatgctcgagctactggatgaattagaacagcttggtgtaaacacactctac
aaaggcccgaaaaaagtaaaagtggaagacagtgattcttatttcgcaggtaaaacaatt
gtcctgaccggaaagctggaagaactgtcaagaaatgatgctaaagcgcagattgaagcg
ctcggcggaaagcttaccggcagcgtcagcaaaaacacagatttggtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcggaagagctgaacattgaagtatggaatgaagaa
cagttattgggagagctaaagaaataa
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integrated database retrieval system
