Bacillus aerius: RE735_15975
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Entry
RE735_15975 CDS
T09365
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baei
Bacillus aerius
Pathway
baei03030
DNA replication
baei03410
Base excision repair
baei03420
Nucleotide excision repair
baei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RE735_15975 (ligA)
03410 Base excision repair
RE735_15975 (ligA)
03420 Nucleotide excision repair
RE735_15975 (ligA)
03430 Mismatch repair
RE735_15975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baei03032
]
RE735_15975 (ligA)
03400 DNA repair and recombination proteins [BR:
baei03400
]
RE735_15975 (ligA)
Enzymes [BR:
baei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RE735_15975 (ligA)
DNA replication proteins [BR:
baei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RE735_15975 (ligA)
DNA repair and recombination proteins [BR:
baei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RE735_15975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RE735_15975 (ligA)
MMR (mismatch excision repair)
DNA ligase
RE735_15975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RE735_15975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
HHH_3
5_3_exonuc
CTD11
Motif
Other DBs
NCBI-ProteinID:
WMT28575
LinkDB
All DBs
Position
complement(2977283..2979289)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEYPDLKAADSP
SQRVGGAVLDAFQKVRHGTPMLSLGNAFHEQDLLDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIPLKINRPLSIEVRGEAFMPKPSFEA
LNEKRLQNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEIGVETQSAGLD
LLDELGFKTNKERRMCQTIEEVIDLIETLKTKRADFSYEIDGIVIKVNSLAQQEELGFTA
KSPRWAVAYKFPAEEVVTKLIDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
KEKDIRLFDQVIVKKAGDIIPEVAGVLIDQRTGEEKPFHMPTECPECHSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFKEQLVSRVSDLYRLTKEELIQL
ERMGEKSVDNLLRSIEQSKENSLERLLFGLGIRFIGSKAAKTLAMHFGDIDQLKQATKEQ
LLEVDEIGEKMADAVVMYFEKEEILNLLNELKEFGVNMTYTGPKPVKVEESDSYFAGKTI
VLTGKLEEMARNDAKSAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEA
KMLEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagcagcgaaacgccggatcgaggaactacaccagattttgaatcaatac
aactacgaatatcacacactggatcgtccaagtgttcctgacgctgaatatgatgcgcgg
atgcgtgagctgatctctctggaggaagaataccctgatttaaaagctgcggattcaccc
tcgcaaagagtaggaggtgctgttttagacgccttccaaaaagtacgtcacggtacaccg
atgctcagtctcggcaatgcgtttcatgaacaggaccttcttgattttgaccgccgggtt
cgtcaagcagtcggtgacgacgtcgcttacaatgtcgagctgaaaattgacggactcgct
gtttctctccgttatgaaaatggcgtgtttgtccggggtgccacgcggggggatgggaca
acaggtgaggatattaccgaaaaccttaaaaccattcgttccatcccgctcaaaatcaat
cggcctctgtcgattgaagtgagaggcgaggcatttatgccaaaaccttcttttgaagcc
cttaacgaaaaaagattacaaaacgaagaagagccgtttgcgaacccgcgtaatgcggct
gctggctcacttcgtcagctcgatccgaaaattgcagcgaaacgaaaccttgatatcttc
gtctacagtatagcggagcttgatgaaattggtgttgaaacgcaaagcgcaggacttgat
cttctcgatgagcttggctttaaaacgaacaaagaaagacggatgtgccaaaccattgaa
gaagtgatcgacctcattgaaacactgaaaacaaagcgtgctgatttctcgtacgaaatc
gatggcattgttattaaagtcaattcattggctcagcaagaagaactaggcttcacagca
aaaagtccacgctgggctgttgcgtacaaatttccggctgaagaagtcgtgacgaagctg
attgatattgaactaagtgtggggcgtactggcgtcatcaccccaacagcgattcttgag
cctgtaaaagtggcagggacgacagtgcaacgtgcttctcttcataatgaagatttgatc
aaagagaaggatatccgcctttttgatcaagtgattgtgaaaaaagcgggcgatattatc
cccgaagtcgcaggtgtactgatcgatcagcgtacaggagaagaaaagccgtttcacatg
ccgacggaatgcccagagtgtcatagtgagctggtgagaattgaaggcgaagtggcttta
cgttgcatcaatccagaatgccctgcccaaatacgtgagggactcattcactttgtttcc
cgcaatgcaatgaacattgatgggcttggcgagcgggtcattacacagcttttcaaagaa
cagcttgtctctcgtgtatcagacctttaccgtttaacaaaagaagagttgattcagcta
gaacgaatgggcgaaaaatcagtcgataacttactgcgttcgatcgagcaatcgaaagaa
aactctcttgaacgtttattatttggacttggtatacgatttattggctccaaagcggca
aagaccttggcgatgcatttcggtgatattgatcaattaaagcaagcgacgaaagagcaa
ttactcgaagttgatgaaatcggtgaaaaaatggctgatgctgttgtcatgtacttcgag
aaagaagaaatactcaatctgctaaatgagctaaaagagtttggggtcaatatgacctat
acaggaccaaaaccggtgaaggttgaagaaagtgattcctattttgcaggcaaaaccatt
gtgctgacagggaaattagaagaaatggcacgaaacgatgcaaaatcagcgatcgaagca
ttaggtggtaaactggcaggtagcgtaagtaaaaaaacagatttagtcattgctggagaa
gcagctggaagtaagctgacaaaggcagaagaacttaatattgaaatttgggacgaagcc
aaaatgctcgaggagctaaagaaataa
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integrated database retrieval system
