Burkholderia aenigmatica: L3V59_11560
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Entry
L3V59_11560 CDS
T09543
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baen
Burkholderia aenigmatica
Pathway
baen03030
DNA replication
baen03410
Base excision repair
baen03420
Nucleotide excision repair
baen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3V59_11560 (ligA)
03410 Base excision repair
L3V59_11560 (ligA)
03420 Nucleotide excision repair
L3V59_11560 (ligA)
03430 Mismatch repair
L3V59_11560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baen03032
]
L3V59_11560 (ligA)
03400 DNA repair and recombination proteins [BR:
baen03400
]
L3V59_11560 (ligA)
Enzymes [BR:
baen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L3V59_11560 (ligA)
DNA replication proteins [BR:
baen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L3V59_11560 (ligA)
DNA repair and recombination proteins [BR:
baen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L3V59_11560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3V59_11560 (ligA)
MMR (mismatch excision repair)
DNA ligase
L3V59_11560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L3V59_11560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
zf-NADH-PPase
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UKD10335
LinkDB
All DBs
Position
1:complement(2452599..2454674)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPLASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPE
LVTLDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVAGALDKTTDLAGS
VTEPVEYACELKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGTN
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDETIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgctagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaactacgcctattacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgttccgcgaactgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgctagattcgccgacgcagcgagtcggcggtgaggcagccggcggcttcacg
ccggtcgtccatgatgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gccgcattcgacaagcgtgtcgccggcgcgctcgacaagacgaccgatctcgccggctcg
gtgacggagccggtcgaatacgcgtgcgaactgaagttcgacggcctcgcgatctcgctg
cgctacgagcaaggtgtattcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggcacgaac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgtgaattcgcgaacccgcgcaacgcggcg
gccggcagccttcgccagctcgactcgaagatcaccgcgcagcgtccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgcccgatacgcacagcgcgctgctc
gactggtacgaatcgctcggtctgcccgtgaaccgcgagcgtgcggtcgtgcacggcgcc
gaaggcttgctcgacttcttccgcaaggtcggcgagaagcgcgaatcgttgccgtacgac
atcgacggcgtcgtctacaaggtcaaccggcgcgacgagcaggagcgcctcggcttcgtg
tcccgtgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaagcgctgaccaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggtgcgaccgtgaccaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccggatcggcgataccgtgatcgtgcgtcgcgcgggcgacgtg
atccccgaggtggtcggcgcgctgctcgaccggcgcccggccgatgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaaacgatc
gcgcgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gagctgaatctcgtgcgcacgccggccgacctgttcaatctcggctttgcgacgctcgcc
gagctcgaccggttcgccgagaagtcagcgcagaatctgctcgattcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcatccgtcatgtaggcgaatcg
acggcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcctcgatc
gaagaactgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgctccaccagttc
ttcgcggaagagcacaaccgcaccgtgatcgagcagttgcgcgcgccgggcaaggtgacg
tggccggaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgacgctcacgcgcgatgccgcgaaggaaatgctcgaagcg
gcgggcgcgaaagtggccggttcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggcctgcaccaactcctggagggcaatacgccatga
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