Bacillus aerophilus: BAE_10955
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Entry
BAE_10955 CDS
T08735
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baer
Bacillus aerophilus
Pathway
baer03030
DNA replication
baer03410
Base excision repair
baer03420
Nucleotide excision repair
baer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAE_10955 (ligA)
03410 Base excision repair
BAE_10955 (ligA)
03420 Nucleotide excision repair
BAE_10955 (ligA)
03430 Mismatch repair
BAE_10955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baer03032
]
BAE_10955 (ligA)
03400 DNA repair and recombination proteins [BR:
baer03400
]
BAE_10955 (ligA)
Enzymes [BR:
baer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAE_10955 (ligA)
DNA replication proteins [BR:
baer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAE_10955 (ligA)
DNA repair and recombination proteins [BR:
baer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAE_10955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAE_10955 (ligA)
MMR (mismatch excision repair)
DNA ligase
BAE_10955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAE_10955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_pol_A_CTD
HHH_8
BRCT_2
HHH_3
CTD11
Motif
Other DBs
NCBI-ProteinID:
QAR53284
LinkDB
All DBs
Position
2120250..2122256
Genome browser
AA seq
668 aa
AA seq
DB search
MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEYPDLKAADSP
SQRVGGAVLDAFQKVRHGTPMLSLGNAFHEQDLLDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYENGVFVRGATRGDGTTGEDITENLKTIRSIPLKINRPLSIEVRGEAFMPKPSFEA
LNEKRLQNEEEPFANPRNAAAGSLRQLDTKIAAKRNLDIFVYSIAELDEIGVETQSAGLD
LLDELGFKTNKERRMCQTIEEVIDLIETLKTKRADFSYEIDGIVIKVNSLAQQEELGFTA
KSPRWAVAYKFPAEEVVTKLIDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
KEKDIRLFDQVIVKKAGDIIPEVAGVLVDQRTGEEKPFHMPTECPECHSELVRIEGEVAL
RCINPQCPAQIREGLIHFVSRNAMNIDGLGERVITQLFKEQLVSRVSDLYRLTKEELIQL
ERMGEKSVDNLLRSIEQSKENSLERLLFGLGIRFIGSKAAKTLAMHFEDIDQLKQATKEQ
LLEVDEIGEKMADAVVTYFEKEEILDLLNELKELGVNMTYTGPKPVKVEESDSYFAGKTI
VLTGKLEEMSRNDAKAAIEALGGKLAGSVSKKTDLVIAGEAAGSKLTKAEELNIEIWDEA
KMLEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataaagaagcagcgaaacgccggatcgaggaactacaccagattttgaatcaatac
aactacgaatatcacacactggatcgtccaagtgttcctgacgctgaatatgatgcgcgg
atgcgtgagctgatctctctggaggaagaataccctgatttaaaagcagccgattcaccc
tcgcaaagagtaggaggtgctgttttagacgccttccaaaaagtacgtcacggtacaccg
atgctcagtctcggcaatgcgtttcatgaacaggaccttcttgattttgaccgccgggtt
cgtcaagcagtcggtgacgacgtcgcttacaatgtcgagctgaaaattgacggactcgct
gtttctctccgttatgaaaatggcgtgtttgtccggggtgccacgcggggggatgggaca
acaggtgaggatattaccgagaacctcaaaaccattcgttccatcccgctcaaaatcaat
cggcctctgtcgattgaagtgagaggcgaggcatttatgccaaaaccttcttttgaagcc
cttaacgaaaaaagattacaaaacgaagaagagccgtttgcgaacccgcgtaatgcggct
gctggctcacttcgtcagctcgatacgaaaattgcagcgaaacgaaaccttgatatcttc
gtctacagtatagcggagcttgatgaaattggtgttgaaacgcaaagcgcaggacttgat
cttctcgatgagcttggctttaaaacgaacaaagaaagacggatgtgccaaaccattgaa
gaagtgatcgacctcattgaaacactgaaaacaaagcgtgctgatttctcatacgaaatc
gatggcattgtcattaaagtcaattcattggctcagcaagaagaactaggcttcacagca
aaaagtccacgctgggctgttgcgtacaaatttccggccgaagaagtcgtgacgaagctg
attgatattgaactaagtgtggggcgtactggcgtcatcaccccaacagcgattcttgag
cctgtaaaagtggcagggacgacagtgcaacgtgcatctcttcataatgaagatttaatc
aaagagaaggatatccgcctttttgatcaagtgattgtcaaaaaagcgggcgatattatc
ccagaggttgcaggggttcttgttgatcagcgaacaggagaagaaaagccgtttcacatg
ccgactgaatgtccagagtgtcatagtgagctggtcagaattgaaggagaagtggcgctt
cggtgcatcaatccacaatgccccgctcaaatacgtgaaggactcattcactttgtgtct
cgtaatgcgatgaatattgatgggctaggcgagcgagtcattacacaacttttcaaagaa
caacttgtctctcgtgtatcagacctttaccgtttaacaaaagaagagttgattcagcta
gaacgaatgggcgaaaaatcagtcgataatttactgcgttcgatcgagcaatcgaaagaa
aactctcttgaacgtttattatttggacttggtattcgatttattggttctaaagcagcg
aagacgttggccatgcactttgaggatatcgatcagttaaaacaagcaacgaaagaacaa
ttacttgaagtagatgaaattggtgaaaaaatggccgatgcagtcgtcacgtactttgag
aaagaagaaatactagatctgctaaatgaactaaaagaacttggggtcaatatgacctac
acagggccaaaaccggtgaaagtagaagaaagtgattcctactttgcaggaaaaacgatt
gtgctgacgggaaaattagaagaaatgtcgcgaaatgatgcaaaggcagcgatcgaagca
ttaggcggcaagttagcaggtagcgtaagtaaaaaaacagacttagtcattgccggcgaa
gcagctggaagtaagctgacaaaggcagaagaactcaatattgaaatttgggacgaagcc
aaaatgctcgaggagctaaagaaataa
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