Buttiauxella agrestis: BADSM9389_11560
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Entry
BADSM9389_11560 CDS
T06676
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bage
Buttiauxella agrestis
Pathway
bage03030
DNA replication
bage03410
Base excision repair
bage03420
Nucleotide excision repair
bage03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bage00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BADSM9389_11560 (ligA)
03410 Base excision repair
BADSM9389_11560 (ligA)
03420 Nucleotide excision repair
BADSM9389_11560 (ligA)
03430 Mismatch repair
BADSM9389_11560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bage03032
]
BADSM9389_11560 (ligA)
03400 DNA repair and recombination proteins [BR:
bage03400
]
BADSM9389_11560 (ligA)
Enzymes [BR:
bage01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BADSM9389_11560 (ligA)
DNA replication proteins [BR:
bage03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BADSM9389_11560 (ligA)
DNA repair and recombination proteins [BR:
bage03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BADSM9389_11560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BADSM9389_11560 (ligA)
MMR (mismatch excision repair)
DNA ligase
BADSM9389_11560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BADSM9389_11560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
ZnuA
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BCG08510
LinkDB
All DBs
Position
1260092..1262110
Genome browser
AA seq
672 aa
AA seq
DB search
MDTIEQQITQLRTTLRHHEYLYHVLDNPEIPDAEYDRLMGELRALEEAHPDLITPDSPTQ
RVGAAPLSEFTQIRHEVPMLSLDNVFDEASYLAFNKRIQDRLKSTEAVTFCCELKLDGLA
VSLLYEDGVLISAATRGDGTTGENITANVRTIRAIPLKLRGENIPRRLEVRGEVFLPQAG
FEKINEEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHH
GRLQQFKEWGLPVSDRIRLCNTAEEVLAFYHQVEAERPTLGFDIDGVVIKVDSLALQETL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVGVVESERPENTTEIVFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTAADLFKLTPG
KLTGLDRMGPKSAQNVVDALAKSKETTFARFLYALGIREVGEATAANLAAYFGTLDALVA
AGVEDLQKVPDVGIVVATHVFNFFAEDSNREVIRQLTEEAGVHWPAPVVINAEEIDSPFA
GKTVVLTGSLSIMSRDDAKARLIELGAKVAGSVSKKTDLVIAGEAAGSKLVKAQELGIEV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacacaatcgaacaacaaattactcaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgtgcttgataacccagaaatcccggatgcggaatacgaccgcctgatgggt
gagttgcgagccctggaagaagcgcatccagatttaatcacccctgactcacctactcag
cgtgttggggcggcaccgctaagcgaattcactcagattcgccatgaagttccgatgctg
tcgcttgataacgtgtttgatgaggcgagctacctcgcatttaataaacggattcaggac
cgtttaaagagcaccgaagcggtgactttttgctgtgagttaaagttagatggcctcgcg
gtaagcctgctatatgaagatggtgtgctgattagcgccgcgacgcgcggtgacggtacg
accggcgaaaatattacggctaatgtgcgtactattcgcgccattcctctgaaattacgc
ggtgagaacatccctcgccgcctcgaagtgcgcggtgaagttttcctgccgcaagcaggc
tttgagaagatcaacgaagaagctcgtcgcaccggggggaaaatttttgctaacccgcgc
aatgcagcggcgggatccttgcgccagcttgatccgcgaatcaccgccaaacgtccgtta
actttcttctgttatggcgttggcgtgctcgaaggtggcgaattacccgccagccatcac
gggcgtttacagcagttcaaagaatggggattgccagtcagcgatcgcattcgtctttgc
aacactgcagaagaagtcctggcgttttatcaccaggttgaggcagagcgcccgacttta
ggttttgatatcgacggtgtggttatcaaagtggactcacttgctctgcaagagacactg
ggttttgttgctcgtgcgccgcgctgggcggtggcatttaaattccccgcccaggaacaa
atgacatttgttcgtgacgttgagtttcaggtgggacgcacgggcgcaataacgcccgtt
gcgcgactggaacctgtgcaggttgcgggtgtactggttagcaacgccactttgcataac
gctgatgaaatcgagcgtctggggttaagaatcggcgatcgcgtggtgattcgtcgcgct
ggggatgttatcccgcaggttgtcggcgtggtggagtctgagcgcccggaaaatacgacg
gaaatcgtcttcccggcacattgcccggtttgcggctcggatgttgaacgagtcgaaggc
gaagccgtcgcgcgttgtaccggcggattgatttgcggtgcgcagcgaaaagaagcgctt
aagcactttgtctcacgtcgtgcgctggatgttgatggcatgggcgacaagataatcgat
caactcgttgaaaaagaatacgttcataccgccgcagatcttttcaagctgacaccggga
aaactgacgggcctggatcgcatggggccaaagtcggctcaaaacgtcgtcgatgcgctt
gcgaagtcgaaagaaacgacattcgcgcgtttcctttatgcgttaggtattcgtgaagtt
ggcgaagcgacagccgcgaatttagccgcttattttggcacgcttgacgctctggttgcg
gctggcgtcgaagatctgcaaaaagtacctgatgtcggcatcgtggttgcgacgcacgtg
ttcaacttcttcgccgaagacagtaatcgcgaagttatccgccaattgaccgaagaagca
ggcgttcactggccagctcccgtcgtgattaacgcggaagaaatcgacagcccgtttgcc
ggcaaaaccgtggttctgacgggctccttaagcattatgtcccgtgatgatgccaaagct
cgtttaattgagttgggcgctaaagttgctggtagcgtgtcgaagaaaactgacctggtg
attgccggtgaagctgctggttcgaagctcgtcaaggcgcaagagctgggtattgaagtt
atcgatgaagcggaaatgattcgcttattaggtgcgtga
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