Baekduia alba: DSM104299_03118
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Entry
DSM104299_03118 CDS
T09120
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bala
Baekduia alba
Pathway
bala03030
DNA replication
bala03410
Base excision repair
bala03420
Nucleotide excision repair
bala03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104299_03118 (ligA)
03410 Base excision repair
DSM104299_03118 (ligA)
03420 Nucleotide excision repair
DSM104299_03118 (ligA)
03430 Mismatch repair
DSM104299_03118 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bala03032
]
DSM104299_03118 (ligA)
03400 DNA repair and recombination proteins [BR:
bala03400
]
DSM104299_03118 (ligA)
Enzymes [BR:
bala01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM104299_03118 (ligA)
DNA replication proteins [BR:
bala03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM104299_03118 (ligA)
DNA repair and recombination proteins [BR:
bala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM104299_03118 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM104299_03118 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSM104299_03118 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM104299_03118 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
HHH
BRCT
DNA_ligase_ZBD
RNA_ligase
Nlig-Ia
LysW-like_globular
Motif
Other DBs
NCBI-ProteinID:
WCB94384
LinkDB
All DBs
Position
3093572..3095587
Genome browser
AA seq
671 aa
AA seq
DB search
MGGVTTKAIAARIEELTAEVRKLNDDYYGAGDSAIPDADYDALKDELTALVAEHPDLEPA
DSPLDKVNAPEQLTGPTIRHARPMLSLAKATTEEAIQTFCGRFEGQVFRVSEKLDGLSLS
IVYEDGKLDYVATRGTGTLGELVTDKARHVIPELPAKIRRKGRVEVRGEALMARSTWQAY
NDAHPDKPLTNPRNGAAGTLMQKDPEAAARSGRLLRFFAFGAEQADGTAIDPEALKIELV
HQTLCADAGEVMAAIHAIGERRDTLDYDIDGAVVRLHEPAAFEAAGYNSAEPRGAIAFKY
PPEEKLTKLLAVEWQVGKIGRIAPRARVEPVFVGGVTVENITLHNPRLIRERDLRIGDTI
AVVRRGDVIPFAGRSIPEDRDGTEQVIEPPVGCPSCGTELEVRGTGEERWCPNLQCPAQI
TRRLMHWASRPAADMEGVGDVWIEKLAEDGVLKSRADFYKITAEQLQAYERMGEVSARNM
VDSIERSKGLGLRRALIGLAIPMASDGTAKRLALAGYERLEDVAAATVDELVAIKDIGPK
VAESVVAFFARPEVVQEITDLRSHGVDLDVHDEDRPVDVAAAGDSPLKGKTVVITGAFTD
PRSGGKVSRPEVTRMVEQAAATATSSVSENTDYLLAGANVGASKTTKADKLGVAVIDQDQ
LWAWLKEAGVA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcgtgacgacgaaggccatcgctgcccgcatcgaggagctgaccgccgaggtc
cggaagctcaacgacgactactacggggcgggcgacagcgcgatcccggacgcggactac
gacgcgctcaaggatgagctgaccgccctcgtcgccgagcacccggacctggagccggcg
gactcgccgctggacaaggtcaacgcgcccgagcagctcaccggcccgacgatccgccac
gcgcggccgatgctctcgctggccaaggcgacgaccgaggaggcgatccagaccttctgc
gggcgcttcgagggccaggtcttccgcgtgtcggagaagctcgacggcctgagcctgtcg
atcgtctacgaggacggcaagctcgactacgtcgccacgcgcggcaccggcacgctcggc
gagctcgtcaccgacaaggcgcgccacgtcatccccgagctgccggccaagatccggcgc
aaggggcgggtcgaggtccgcggcgaggcgctgatggcccgctcgacctggcaggcctac
aacgacgcccatcccgacaagccgctgaccaacccgcgcaacggcgcggccgggacgctg
atgcagaaggacccggaggccgcggcccggtccgggcgcctgctgcgcttcttcgcgttc
ggcgccgagcaggccgacgggaccgcgatcgaccccgaggcgctcaagatcgagctcgtc
caccagacgctctgcgccgacgccggcgaggtcatggcggcgatccacgcgatcggcgag
cgccgcgacacgctggactacgacatcgacggcgcggtcgtccgcctccacgagcccgcc
gcgttcgaggccgccggctacaacagcgccgagccgcgcggcgcgatcgccttcaagtac
ccacccgaggagaagctgaccaagctgctggcggtcgagtggcaggtcggcaagatcggc
cggatcgcgccccgcgcccgcgtcgagccggtcttcgtcggcggcgtcaccgtcgagaac
atcacgctgcacaacccgcggctgatccgcgagcgcgacctgcgcatcggcgacacgatc
gcggtcgtccggcgcggcgacgtcatcccgttcgccggccgctcgatccccgaggaccgc
gacggcaccgagcaggtcatcgagccgccggtgggctgcccgagctgcggcaccgagctc
gaggtccgcggcaccggcgaggagcgctggtgccccaacctccagtgcccggcccagatc
acgcgccgcctcatgcactgggcgagccggccggccgccgacatggagggcgtcggcgac
gtctggatcgagaagctggccgaggacggcgtcctgaagtcgcgcgccgacttctacaag
atcaccgccgagcaattgcaggcctacgagcggatgggcgaggtcagcgcgcgcaacatg
gtggactcgatcgagcgctccaagggcctgggcctgcgccgggcgctgatcggcctcgcg
atcccgatggccagcgacggcacggccaagcgcctcgcgctcgccggctacgagcggctg
gaggacgtcgccgccgcgaccgtggacgagctcgtcgcgatcaaggacatcgggccgaag
gtcgccgagtcggtcgtcgcgttcttcgcccggcccgaggtcgtgcaggagatcacggac
ctgcggtcacacggcgtcgacctcgacgtccacgacgaggaccgcccggtcgacgtcgcc
gccgccggcgactcgcccctgaagggcaagacggtggtcatcaccggcgccttcaccgac
ccgcgctcgggcggcaaggtcagccggcccgaggtcacccgcatggtcgagcaggccgcc
gccaccgcgacctcctcggtctccgagaacaccgactacctcctggccggcgccaacgtc
ggcgcctccaagacgaccaaggccgacaagctcggcgtcgcggtcatcgaccaggaccag
ctctgggcctggctcaaggaagcaggagtggcctga
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