Brevundimonas albigilva: M8231_05400
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Entry
M8231_05400 CDS
T08389
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
balb
Brevundimonas albigilva
Pathway
balb03030
DNA replication
balb03410
Base excision repair
balb03420
Nucleotide excision repair
balb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
balb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M8231_05400 (ligA)
03410 Base excision repair
M8231_05400 (ligA)
03420 Nucleotide excision repair
M8231_05400 (ligA)
03430 Mismatch repair
M8231_05400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
balb03032
]
M8231_05400 (ligA)
03400 DNA repair and recombination proteins [BR:
balb03400
]
M8231_05400 (ligA)
Enzymes [BR:
balb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M8231_05400 (ligA)
DNA replication proteins [BR:
balb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M8231_05400 (ligA)
DNA repair and recombination proteins [BR:
balb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M8231_05400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M8231_05400 (ligA)
MMR (mismatch excision repair)
DNA ligase
M8231_05400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M8231_05400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
DZR_2
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
URI16415
LinkDB
All DBs
Position
complement(1080050..1082377)
Genome browser
AA seq
775 aa
AA seq
DB search
MAANPLIPVEDLSPQAAEIDLARLAAEIARHDALYGEAAPEISDADYDALRQRNTAVETR
FPDLVRPDSPSNKVGSAASSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPADE
PIAFVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLKTIADVRPSLKGDGWPD
RIEIRGEVYAPNDAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDAAVTAGRPLAFFAYA
WGEHSSDFAETQWEALQKLKAWGFPVNDRSRRVEGAEGLLAAYRELERDRAALGYDIDGV
VYKVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHPVT
VGGVVVRNATLHNEDEIARLDVRIGDTVRLQRAGDVIPQILGIVPELRPADALPYVFPDR
CPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVGRRAFDIEGLGEKQLVAFHARGW
IREPADIFRLARDEAKLAELAQDDGYGETSIRNLIAGIEARRVISLDRFLFGLGVREIGE
QTSLVLARAFESWAALKAACLQAAAGIPSAAWVELAGAHAVSPRVLALMAQAAPPAADPW
PEATMDMKIGQAFPGMAAPARRALAAMTDDWAGLVELARVAREEAPSEMLNQIGGVAGVG
PVAALALAHFFHEPHNLAVVSALEAELTRIVDVERPQADTPVAGRTVVFTGSLERFTRDE
AKARAESLGAKVSGSVSSKTDYVVAGPGAGSKLKEAEKHGVQVLTEDEWLALIGG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaatcctctcattcccgtcgaagacctgtcgccccaggcggccgagatcgat
ctggcgcggctggcggccgagatcgcgcggcacgacgccctgtacggcgaggccgcgccc
gagatttccgacgccgactacgacgccctgcgccagcgcaacacggctgtcgagacccgc
tttcccgacctggtgcgcccggattcgccgtccaacaaggtgggcagcgccgcctccagc
cagttcgccgaggtgcgccacggcgtgcccatgctgtcgctggacaacgccttcgacgag
ggcgaggtgcgcgacttcgtcgcccggatcgcccggttcctgaagctgccggccgacgaa
cccatcgccttcgtcgccgagcccaagatcgacggtctgtccgccaatctgctctatgtc
gacggccggctgaccctcggcgccacgcgcggcgacggccgcacgggcgaggacgtgacc
gccaatctgaaaaccatcgccgacgtgcgcccgtcgctgaagggcgacggctggcccgac
cggatcgaaatccgcggcgaggtctatgcccccaacgacgccttcgccgccttcaacgcc
gcggccgaggccgaggggcggcgcacctacgccaatccacgcaacttcgccgccggctcg
ctgcgccagaaggacgccgccgtcacggccgggcgcccgctggccttcttcgcctacgcc
tggggcgagcattccagcgacttcgccgagacccagtgggaggcgctgcagaaactgaag
gcctggggctttccggtcaacgaccgctcgcgccgggtggagggggccgagggcctgctg
gcggcctatcgcgagctggagcgggatcgcgccgccctgggctatgacatcgacggcgtg
gtgtacaaggtcgaccggctggactggcagcgacgcctgggcttcgtcgcccgcagcccg
cgctgggccatcgcgcacaagttcccggcccagcaggcgacgaccgtgctggaggggatc
gacatccaggtgggacgcaccggctcgctgacgcccgtggcgcggctgcatccggtgacg
gtcggcggcgtggtggtcaggaacgcgaccctgcacaacgaggacgagatcgcccggttg
gacgtgcgcatcggcgacaccgtgcgcctgcagcgcgccggcgacgtcatcccccagatc
ctggggatcgtgcccgaactgcgcccggccgacgcgcttccctacgtctttcccgaccgg
tgccccgtgtgcggatcggaggcggtgcgcgagggcgacgaggtcaagcggcgctgcacc
ggcggcctgatctgcgacgcccagatcgtcgaacgcctgaagcatttcgtcggccgccgc
gccttcgacatcgagggcctgggcgaaaagcagctggtcgccttccatgcgcgcggctgg
atccgcgagcccgccgacatcttccgcctggcgcgcgacgaggccaagctggccgaactg
gcccaggacgacggctatggcgagaccagcatccgcaacctgatcgccggcatagaggcg
cggcgggtcatcagtctggaccgcttcctgttcggcctgggcgtgcgcgagatcggcgag
cagacctcgctggtcctggcccgcgccttcgaaagctgggcggcgctgaaggcggcgtgc
cttcaggcggccgcgggaattccctcggccgcctgggtcgaactggccggcgcccatgcg
gtttcgccccgcgtcctggccctgatggcccaggccgcgccgcccgccgccgatccctgg
cccgaggcgacgatggacatgaagatcggccaggcctttcccggcatggccgcccccgcc
cggcgcgcgctggccgccatgaccgacgactgggcgggcctggtcgaactggcccgcgtc
gcccgcgaggaggcgccgtcggagatgctgaaccagatcggcggcgtcgccggcgtcggc
cccgtggcggccctggccctggcgcacttcttccacgagccgcacaatctggcggtcgtg
tcggccctggaagccgagctgacccgcatcgtcgacgtcgaacggccccaggccgacacc
ccggtcgcgggcaggacggtggtcttcaccggctcgctggaacgcttcacccgcgacgag
gccaaggcccgcgccgaaagcctgggcgccaaggtgtccggctcggtgtccagcaagacc
gactatgtggtggccggtccaggcgcgggctccaagctgaaggaggccgaaaagcacggc
gtccaggtgctgaccgaggacgaatggctggcgctgatcggcggctga
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