Bartonella alsatica: HWV54_01375
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Entry
HWV54_01375 CDS
T06670
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bals
Bartonella alsatica
Pathway
bals03030
DNA replication
bals03410
Base excision repair
bals03420
Nucleotide excision repair
bals03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWV54_01375 (ligA)
03410 Base excision repair
HWV54_01375 (ligA)
03420 Nucleotide excision repair
HWV54_01375 (ligA)
03430 Mismatch repair
HWV54_01375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bals03032
]
HWV54_01375 (ligA)
03400 DNA repair and recombination proteins [BR:
bals03400
]
HWV54_01375 (ligA)
Enzymes [BR:
bals01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWV54_01375 (ligA)
DNA replication proteins [BR:
bals03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWV54_01375 (ligA)
DNA repair and recombination proteins [BR:
bals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWV54_01375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWV54_01375 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWV54_01375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWV54_01375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QLC51625
LinkDB
All DBs
Position
complement(316947..319106)
Genome browser
AA seq
719 aa
AA seq
DB search
MNKDKIKNLTAFEAESELEWLAKEIARHDVLYNCNDQPEISDAEYDALRKRNAEIEALFP
ELIRADSPSHKIGAPVSEKFEKSVHVQPMLSLDNAFNSEDVSEFVERVRRFLRLPAAQVL
EITAEPKIDGLSLSLRYEKGRLVCAATRGDGYIGENVTANAQTISDIPKVLQSNFPDIIE
VRGEVYMGREDFQALNMKQQSEGKFAFANPRNAAAGSLRQLDSRVTASRKLKFFAYAWGE
VSEMPAVDQMGMMKKLKEYGFVINPFTKVFQTVKEIISYYHDIEELRHSLSYDIDGIVYK
VNDLKFQMRLGFVSRSPRWAIAHKFPAEKAMALLEGIDIQVGRTGALTPVARLKPITVGG
VVITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIVQRAGDVIPQIVDIVAEKRPKDS
SAFVFPHLCPACGSHAVREVGEAVRRCTGGLICPSQAIERIRHFVSRNAFDIEGLGKKQV
EFFFHVQDKTLCINTPADIFTLQRRQEKSLTRLENMEGFGAISVRKLYDAINARRKISLS
RFLFALGIRHVGEVNARRLAHAYQNYTAFETAAIAATMPCVKAGKEGNEAWMELINIEGI
GPQVGSAIIDFYKEAHNREVLAVLLEEVTPFDEKPIITASSSIAGKIIVFTGTLVRMSRD
EAKALAERLGAKTSGSLSKKTDLLVAGAGAGSKLTKAQELGVEVIDEETWLQLIEGHYV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggataaaattaaaaacctcactgcttttgaggcagaaagtgaattagagtgg
ttagcaaaagagattgcacgtcatgatgtgctttataattgtaatgaccaacctgaaatt
tctgatgctgaatatgatgctcttcgtaaacgtaatgcagaaattgaagctctctttcct
gaactcattcgtgccgattcgccttcacataaaattggagcaccagtttccgaaaagttt
gaaaaatctgttcatgtacagccgatgctttcacttgataacgcctttaattctgaagat
gttagtgagtttgtggagcgtgttcgtcgttttttgcggctgccagcagcacaagtatta
gaaataacagctgaaccgaagattgatggtttatctttatctttgcgctatgaaaaagga
aggcttgtatgtgcagcaacacgaggtgatgggtatataggtgaaaatgttacagcgaat
gcacaaacaatttctgatattccaaaagtcttgcagagtaattttcctgatattattgag
gttcgcggtgaagtttacatggggagggaggattttcaagcgcttaatatgaaacaacag
agtgagggaaaattcgcttttgctaatcctagaaatgctgcagctggttctttacgtcag
ctcgattcacgggtaacggcaagtagaaaacttaaattttttgcttatgcttggggtgaa
gtaagtgaaatgccagcagtggaccaaatgggaatgatgaaaaagctaaaagaatatggc
tttgttatcaatccattcacaaaagtttttcagacagtgaaagaaattatttcatattat
catgatatcgaagaactgcgccattctttaagttatgatattgatgggattgtttataag
gttaatgatttaaagttccaaatgcgattggggtttgtatctcgttcaccacgttgggca
attgcgcataaatttccagcagaaaaagctatggctcttttggaaggcattgatattcaa
gtaggacgaactggagctttaacccctgttgcgcgccttaaacctattactgttgggggg
gtagtgattaccaatgcaagtttgcataatgaggattatattaaaggaattggccataaa
ggagagttaattcgtgaagggcgtgatatccgtgtaggcgataccgtgattgtccaacgt
gcgggtgacgttattcctcaaatcgttgatattgttgctgaaaagcgtccaaaagactct
tctgcttttgtttttcctcatctatgtccagcttgtgggagtcatgctgttcgtgaagta
ggtgaagctgtgcgtcgatgtacaggtgggcttatttgtccctcacaagcgattgagcgt
attcgtcattttgtttcgcgtaatgcctttgatattgagggacttgggaaaaaacaggtg
gaatttttttttcatgttcaagacaagactctttgtattaacacaccagccgatatcttt
actttacaacgtcgccaagaaaaatctttgacgcgcttagaaaatatggaaggttttggt
gctatttcagttcgtaaactttatgatgccattaatgcgcgccgaaaaatttctttaagt
cgttttttatttgcattaggaattcgtcatgtgggggaagtaaatgcacgacgtcttgca
catgcttatcaaaattatacggcttttgagacagcggcgatagcagctaccatgccatgt
gttaaggcaggtaaagaaggcaatgaggcttggatggagctcatcaatattgaaggaatt
ggaccacaggtagggagcgcaattattgatttttataaggaagcgcataaccgtgaggtt
ttggctgttttgcttgaagaagtgactccttttgatgaaaaacctataataacagcatct
tcatcgatagcaggaaaaatcattgtttttacaggaactttggtacgtatgtcacgtgat
gaagcaaaagcattggcagaacggttaggggcaaaaacttccggttcactttctaaaaaa
acagatctccttgttgcaggagctggagcaggatcgaagttaactaaagcacaagagtta
ggcgttgaagttatcgatgaagagacttggctacagttgattgaaggacattatgtttag
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integrated database retrieval system
