Burkholderia ambifaria AMMD: Bamb_2057
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Entry
Bamb_2057 CDS
T00398
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03030
DNA replication
bam03410
Base excision repair
bam03420
Nucleotide excision repair
bam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bamb_2057
03410 Base excision repair
Bamb_2057
03420 Nucleotide excision repair
Bamb_2057
03430 Mismatch repair
Bamb_2057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bam03032
]
Bamb_2057
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_2057
Enzymes [BR:
bam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bamb_2057
DNA replication proteins [BR:
bam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bamb_2057
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bamb_2057
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bamb_2057
MMR (mismatch excision repair)
DNA ligase
Bamb_2057
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bamb_2057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
Strep_pep
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABI87613
UniProt:
Q0BE10
LinkDB
All DBs
Position
1:complement(2253998..2256073)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPD
LVTPDSPTQRVGGEVAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALGKTTDLAGS
VTDPVEYACELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAH
VPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVT
WAEGPPAPRAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgtgccgcgtggctg
cgcgaccaactcgagcgggcgaattacgcctattacgtgctcgaccagccggatctgccc
gacgccgaatacgatcgactgttcggcgagctgcagcaactcgaaaccgatcatcccgac
ctcgtgacgcccgactcgccgacgcagcgcgtcggcggcgaagtggcgggcggtttcacg
ccggtcgtccatgatgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gccgcgttcgacaagcgcgtcgccgatgcgctcggcaagacgaccgatctcgccggctcg
gtgacggacccggtcgaatatgcgtgcgagctgaagttcgacgggctggcaatctcgctg
cgctacgagcacggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgacggagaacgtccgcacgatccgctcgatcccgctgaagctgaagggcgcgcac
gtgccggccctgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgtgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcggccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgccggacacgcacagcgcactgctc
gactggtacgagtcgttcggcctgccggtgaaccgcgagcgcgcggtcgtgtacggcgcc
gacggcctgctcggcttcttccgcaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccggcgcgacgaacaggatcgcctcggcttcgtg
tcgcgcgcaccgcgcttcgcgctcgcgcacaagtttcccgcacaggaagcgctgaccagg
ctcgtcgcgatcgacgtgcaggtcggccgcacgggtgcgatcacgccggtcgcgcggctc
gaacccgtgttcgtcggcggcgcgacggtgaccaacgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgataccgtgatcgtgcggcgcgcgggcgacgtg
atccccgaggtcgtcggcgcgctgctcgatcgccggccggacgatgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggttcgaagatcgagcggttgccggacgaggcgatc
gcgcgctgcaccggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgtcgcgcgctcgacatcgacgggctcggcgagaagatcatcgatcagctcgtc
gaactgaatctcgtgcgcacgccggccgacttgttcaatctcggtttcgcgacgctcgcg
gaactcgaccggttcgccgagaagtccgcacagaatttgctcgactcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcgggatccgccatgtcggtgaatcg
accgcgaaggatctcgcgaagcacttcgggtcgctgaccccgatcatggacgcgtcgatc
gaggaactgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgatccaccagttc
ttcgcggaagaacacaaccgcaccgtgatcgagcaactgcgcgcgcccggcaaggtcacg
tgggccgaaggcccgcccgcgccgagggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgaatctcacccgcgacgcggcgaaggagatgctcgaagcg
gcgggcgcgaaagtcgcgggctcggtatcgaagaagacggattacgtggtcgcgggcgcc
gacgccggcagcaagctcgcgaaggccgaggaactcggcatccccgtactggacgaagac
ggactgcaccaactcctggagggcaacaccccatga
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