Bacillus amyloliquefaciens CC178: U471_06760
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Entry
U471_06760 CDS
T02893
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bamc
Bacillus amyloliquefaciens CC178
Pathway
bamc03030
DNA replication
bamc03410
Base excision repair
bamc03420
Nucleotide excision repair
bamc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bamc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U471_06760
03410 Base excision repair
U471_06760
03420 Nucleotide excision repair
U471_06760
03430 Mismatch repair
U471_06760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bamc03032
]
U471_06760
03400 DNA repair and recombination proteins [BR:
bamc03400
]
U471_06760
Enzymes [BR:
bamc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U471_06760
DNA replication proteins [BR:
bamc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U471_06760
DNA repair and recombination proteins [BR:
bamc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U471_06760
NER (nucleotide excision repair)
GGR (global genome repair) factors
U471_06760
MMR (mismatch excision repair)
DNA ligase
U471_06760
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U471_06760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AGZ55386
LinkDB
All DBs
Position
677659..679668
Genome browser
AA seq
669 aa
AA seq
DB search
MMDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDS
PTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGL
AVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFE
ALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGL
DFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYT
AKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDL
IKEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTGCPECESELVRIEGEVA
LRCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIR
LERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEE
ELLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKT
IVLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNE
AQLLGELKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcag
tacagttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacaga
ctgatgcaggagctgattgccatagaggaagagcacccggaactcagaacgcctgattcg
cccacacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcatggcacg
ccgatgctcagtctcggcaacgcatttaacgatgatgacctccgcgattttgaccgccgc
gtccgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtctt
gctgtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacgga
acgacgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatg
aaacggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaa
gcgctcaatgaagaaaggctgaaacatgaagaggagccgttcgccaatccccggaatgcg
gctgcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatc
ttcgtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcaaggcctg
gattttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgata
gatgaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaa
attgacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacg
gcaaaaagcccgcgctgggcgattgcgtataaattcccggcggaagaggtcgtgacaaaa
ctgctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgaccgccgttctg
gaaccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagattta
attaaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatc
atccctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaat
atgccgaccggatgccctgagtgcgaaagcgaacttgtccgcattgaaggagaagtcgcg
ctgcgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtc
tcacgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgt
gaacatctcgtccgtaatgtcgctgatttgtataagctgacgaaagagcaggtcatccgg
cttgagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaa
gagaattcgctggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcg
gccaaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagtcacggaagaa
gagctgcttgcggtggatgaaatcggcgaaaagatggccgatgccgttatcacctatttc
cgcaaagaagaaatgcttgagctattgaatgaacttgaggaactcggtgtgaacacactc
tacaaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaacc
atcgtgttgaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaa
gcgctcggcggaaagctgacgggatctgtcagcaaaaaaacagatttgctgattgccgga
gaagcggccggaagcaagctgacaaaagcgcaggaattaaatattgaagtatggaatgaa
gcacagctattgggagagctaaagaaataa
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