Bacillus amyloliquefaciens LFB112: U722_03490
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Entry
U722_03490 CDS
T02965
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bamf
Bacillus amyloliquefaciens LFB112
Pathway
bamf03030
DNA replication
bamf03410
Base excision repair
bamf03420
Nucleotide excision repair
bamf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bamf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U722_03490
03410 Base excision repair
U722_03490
03420 Nucleotide excision repair
U722_03490
03430 Mismatch repair
U722_03490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bamf03032
]
U722_03490
03400 DNA repair and recombination proteins [BR:
bamf03400
]
U722_03490
Enzymes [BR:
bamf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U722_03490
DNA replication proteins [BR:
bamf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U722_03490
DNA repair and recombination proteins [BR:
bamf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U722_03490
NER (nucleotide excision repair)
GGR (global genome repair) factors
U722_03490
MMR (mismatch excision repair)
DNA ligase
U722_03490
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U722_03490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AHC41217
LinkDB
All DBs
Position
681169..683175
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCDTIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTSCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgattgccatagaggaagagcacccggaactcagaacgcctgattcgccc
acacagcgggtcgggggagcggtgcttgaatcttttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgatctccgcgattttgaccgccgcgtc
cgtcaggctgtcggtgacggcgtcgcttacaatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatatcaccgaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cgtaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaagcg
ctcaatgaggaaaggctgaaacatgaagaggagccgttcgccaatccccggaacgcggct
gcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgagatgggtgtggaaacacagagtcagggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgacacgatagat
gaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccttatgaaatt
gacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagaactcgggtatacggca
aaaagcccgcgctgggcgattgcttacaaattcccggctgaagaggtcgtgacaaaactg
ctcgatatcgaactgaatgttggaagaacgggcgttattacgccgaccgccgttctggaa
ccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatcatc
cctgaggtcgtcaatgtcttaattgaacagcggaccggggaagaaaaagaattcaatatg
ccgaccagctgccctgagtgcgaaagcgaacttgtccgcattgaaggggaagtcgcgctg
cgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtctca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttgtataagctgacgaaagaacaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacgcctgctgttcggtctcggtatccgttttatcggctcaaaagcggcc
aaaacactggccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaagag
ctgcttgcggtagatgaaatcggcgaaaagatggccgatgccgttatcacctatttccgc
aaagaggaaatgcttgagcttttgaatgaacttgaggaactcggtgtgaacacactctac
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggtaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccggagaa
gcggccggaagcaagctgacaaaagcgcaggagttaaacattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
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