Bacillus amyloliquefaciens IT-45: KSO_016260
Help
Entry
KSO_016260 CDS
T02462
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03030
DNA replication
bami03410
Base excision repair
bami03420
Nucleotide excision repair
bami03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSO_016260 (ligA)
03410 Base excision repair
KSO_016260 (ligA)
03420 Nucleotide excision repair
KSO_016260 (ligA)
03430 Mismatch repair
KSO_016260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bami03032
]
KSO_016260 (ligA)
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_016260 (ligA)
Enzymes [BR:
bami01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KSO_016260 (ligA)
DNA replication proteins [BR:
bami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KSO_016260 (ligA)
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KSO_016260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSO_016260 (ligA)
MMR (mismatch excision repair)
DNA ligase
KSO_016260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSO_016260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AGF28739
LinkDB
All DBs
Position
complement(3274707..3276713)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCDTIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTSCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgattgccatagaggaagagcacccggagctcagaacgcctgattcgccc
acacagcgggtcgggggagcggtgcttgaatcttttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgatctccgcgattttgaccgccgcgtc
cgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatatcaccgaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cgtaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaagcg
ctcaatgaggaaaggctgaaacatgaagaggagccgttcgccaatccccggaacgcggct
gcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgagatgggtgtggaaacacagagtcagggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgacacgatagat
gaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccttatgaaatt
gacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagaactcgggtatacggca
aaaagcccgcgctgggcgattgcttacaaattcccggctgaagaggtcgtgacaaaactg
ctcgatatcgaactgaatgtcggaagaacgggcgttattacgccgaccgccgttctggaa
ccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatcatc
cctgaggtcgtcaatgtcttaattgaacagcggaccggggaagaaaaagaattcaatatg
ccgaccagctgccctgagtgcgaaagcgaacttgtccgcattgaaggggaagtcgcgctg
cgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtctca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttgtataagctgacgaaagaacaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacgcctgctgttcggtctcggtatccgttttatcggctcaaaagcggcc
aaaacactggccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaagag
ctgcttgcggtagatgaaatcggcgaaaagatggccgatgccgttatcacctatttccgc
aaagaggaaatgcttgagcttttgaatgaacttgaggaactcggtgtgaacacactctac
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggtaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccggagaa
gcggccggaagcaagctgacaaaagcgcaggagttaaacattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
DBGET
integrated database retrieval system
