Bacillus velezensis UCMB5036: BAM5036_0623
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Entry
BAM5036_0623 CDS
T02480
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baml
Bacillus velezensis UCMB5036
Pathway
baml03030
DNA replication
baml03410
Base excision repair
baml03420
Nucleotide excision repair
baml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAM5036_0623 (ligA)
03410 Base excision repair
BAM5036_0623 (ligA)
03420 Nucleotide excision repair
BAM5036_0623 (ligA)
03430 Mismatch repair
BAM5036_0623 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baml03032
]
BAM5036_0623 (ligA)
03400 DNA repair and recombination proteins [BR:
baml03400
]
BAM5036_0623 (ligA)
Enzymes [BR:
baml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAM5036_0623 (ligA)
DNA replication proteins [BR:
baml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAM5036_0623 (ligA)
DNA repair and recombination proteins [BR:
baml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAM5036_0623 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAM5036_0623 (ligA)
MMR (mismatch excision repair)
DNA ligase
BAM5036_0623 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAM5036_0623 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
CCP20678
LinkDB
All DBs
Position
657509..659518
Genome browser
AA seq
669 aa
AA seq
DB search
MMDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDS
PTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGL
AVSLRYEDGYFVRGATRGDGMTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFE
ALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGL
DFLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYT
AKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDL
IKEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTSCPECESELVRIEGEVA
LRCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIR
LERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEE
ELLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKT
IVLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNE
AQLLGELKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcag
tacagttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacaga
ctgatgcaggagctgattgccatagaggaagagcacccggagctcagaacgcctgattcg
cccacacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcacggcacg
ccgatgctcagtctcggcaacgcatttaacgatgatgatctccgcgattttgaccgccgg
gtccgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtctt
gctgtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacgga
atgacgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatg
aaacggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaa
gcgctcaatgaagaaaggctgaaacatgaagaggagccgttcgcaaatccccggaacgcg
gctgcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatc
ttcgtctacagtatagcggagcttgacgagatgggtgtggaaacacagagtcagggcctg
gattttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgata
gatgaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaa
attgacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacg
gcaaaaagcccgcgctgggcgattgcttataaattcccggcggaagaggtcgtgacaaaa
ctgctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgaccgccgttctg
gaaccggtaaaagtagcgggaacgacggtctcaagagcatcccttcataacgaagattta
attaaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatc
atccctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaat
atgccgaccagctgccctgagtgcgaaagcgaacttgtccgcattgaaggagaagtcgcg
ctgcgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtc
tcacgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgt
gaacatctcgtccgtaatgttgctgatttgtataagctgacgaaagagcaggtcatccgg
cttgagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaa
gagaattcgctggagcgcctgctgttcggtctcggcatccgttttatcggctcaaaagcg
gccaaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagctacggaagaa
gagctgcttgcagtagatgaaatcggcgaaaagatggccgatgccgttatcacctatttc
cgcaaagaagaaatgcttgagctattgaatgaacttgaggaactcggtgtgaacacactc
tacaaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaacc
atcgtgttgaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaa
gcgctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccgga
gaagcggccggaagcaagctgacaaaagcgcaggaattaaatattgaagtatggaatgaa
gcacagctattgggagagctaaagaaataa
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