Bacillus velezensis TrigoCor1448: AJ82_03920
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Entry
AJ82_03920 CDS
T03161
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bamt
Bacillus velezensis TrigoCor1448
Pathway
bamt03030
DNA replication
bamt03410
Base excision repair
bamt03420
Nucleotide excision repair
bamt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bamt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AJ82_03920 (ligA)
03410 Base excision repair
AJ82_03920 (ligA)
03420 Nucleotide excision repair
AJ82_03920 (ligA)
03430 Mismatch repair
AJ82_03920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bamt03032
]
AJ82_03920 (ligA)
03400 DNA repair and recombination proteins [BR:
bamt03400
]
AJ82_03920 (ligA)
Enzymes [BR:
bamt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AJ82_03920 (ligA)
DNA replication proteins [BR:
bamt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AJ82_03920 (ligA)
DNA repair and recombination proteins [BR:
bamt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AJ82_03920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AJ82_03920 (ligA)
MMR (mismatch excision repair)
DNA ligase
AJ82_03920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AJ82_03920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AHK48279
LinkDB
All DBs
Position
690711..692717
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTRCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgattgccatagaggaagagcacccggaactcagaacgcctgattcgccc
acacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgacctccgcgatttcgaccgccgcgtc
cgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaagcg
ctcaatgaagaaaggctgaaacatgaagaggagccgttcgccaatccccggaacgcggct
gcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcagggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgatagat
gaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaaatt
gacgggatcgtcatcaaagtcgactcgctcgaccagcaggaagagctcgggtatacggca
aaaagcccgcgctgggcgattgcttataaattcccggcggaagaggtcgtgacaaaactg
ctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgaccgccgttctggaa
ccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatcatc
cctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaatatg
ccgaccagatgccctgagtgcgaaagcgaacttgtccgcattgaaggagaagtcgcgctg
cgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtctca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttgtataagctgacgaaagagcaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagctacggaagaagag
ctgcttgcggtggatgaaatcggcgaaaagatggccgatgccgttatcacctatttccgc
aaagaagaaatgcttgagctattgaatgaacttgaggaactcggtgtgaacacactctac
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccggagaa
gcagccggaagcaagctgacaaaagcgcaggaattaaatattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
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