Candidatus Bipolaricaulis anaerobius: BARAN1_0440
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Entry
BARAN1_0440 CDS
T05525
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bana
Candidatus Bipolaricaulis anaerobius
Pathway
bana03030
DNA replication
bana03410
Base excision repair
bana03420
Nucleotide excision repair
bana03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BARAN1_0440 (ligA)
03410 Base excision repair
BARAN1_0440 (ligA)
03420 Nucleotide excision repair
BARAN1_0440 (ligA)
03430 Mismatch repair
BARAN1_0440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bana03032
]
BARAN1_0440 (ligA)
03400 DNA repair and recombination proteins [BR:
bana03400
]
BARAN1_0440 (ligA)
Enzymes [BR:
bana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BARAN1_0440 (ligA)
DNA replication proteins [BR:
bana03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BARAN1_0440 (ligA)
DNA repair and recombination proteins [BR:
bana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BARAN1_0440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BARAN1_0440 (ligA)
MMR (mismatch excision repair)
DNA ligase
BARAN1_0440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BARAN1_0440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
V_ATPase_prox
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SQD92465
UniProt:
A0A2X3MJZ8
LinkDB
All DBs
Position
BARAN1:complement(429372..431378)
Genome browser
AA seq
668 aa
AA seq
DB search
MAVPTEVRARVEALRAEIRRHDYLYHVLDRPEITDAEYDRMFRELVDLEARYPELVTPDS
PTQRAGAPPAAEFRPVPHALPMLSLQNCFRDEELAEWHDRVRRLLGEEQVEYVCEPKLDG
LSVELVYEDGVFVVGSTRGDGRVGEDVTANLRTIRQLPLRLFPVNGSVPRLLEVRGEVYM
EKAAFLRLNEERARRGEPEFANPRNAAAGSLRQLDPAITARRPLKLFCYHVGRVEGIEIR
SQAQLLTTFPSLGLPVNPRWKLGRDLPEVRAYYRELLAARDEVPYATDGMVVKVNDFSQR
ERLGEIARAPRWAIAYKFPAEEALTRVREIVVQVGRTGALTPVAHLDPVEVSGVTVSRAT
LHNEDEVRRKDVRVGDWVIVRRAGEVIPEIVRALPERRTGEEREFQMPELCPACGGPVVR
PAGEATHRCENLSCPARIKEAILHYASRRAADIQGLGEKLVDRLVETGLVARISDLYRLR
REDLLAVERMGEKSAQNLLGEIERSKGMSLARLIFALGIRHVGERVAEFLAERFPSLEAL
SHATVEELTALRGVGPQIAQSIVSFFRNEENQRLIAELAAVGVDPRAGEPQAGPLSGKVF
VFTGTLGGLTRDEAQRLVASRGGRVASTVSRQVDYVVAGENPGSKLDRARELGIPVLTEA
EFRRLIGY
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcccaacggaggtccgagcgcgggtggaggcgttgcgcgccgagatccggcgc
cacgactacctgtaccatgtcctggaccgtcccgagatcaccgatgctgagtacgaccgg
atgttccgcgagctcgtggacctcgaggcccgctaccccgagctcgtgacgccggactcg
ccgacccagcgggccggcgcaccgcccgcggccgagttccgccccgtcccccacgccctc
cccatgctctccctccagaactgcttccgcgatgaggagcttgcggaatggcacgaccgg
gtgcggcggctcctcggggaggagcaggtggagtacgtgtgcgagccgaagctcgatggc
ctatcggtggagctcgtgtacgaggacggggtgttcgtcgtcggctccacgcggggcgat
ggtcgggtgggcgaggatgtgacggccaacctgcggacgatccgccagctcccgctgcgg
ctgttcccggtgaacgggagcgtgccccgcctcctcgaggtgcggggcgaggtgtacatg
gaaaaggcggcgttcctccggctgaatgaggaacgggcccgtcgcggggagccggagttc
gccaacccccgcaacgccgcggcggggagcctccgccagctcgaccccgcgatcaccgcc
cgccgccccctcaagctcttctgctaccacgtgggacgggtggaggggatcgagatccgc
tcccaggcccagctcctgaccaccttcccctccctcggcctccccgtgaacccacggtgg
aagctgggccgggatctccccgaggtccgggcctactaccgcgagctcctcgccgcgagg
gacgaggtcccgtacgccacggatgggatggtggtcaaggtgaacgacttctcccagcgg
gagaggctgggggagatcgcccgcgccccgcgatgggcgatcgcgtacaagttccccgct
gaggaggccctgacccgggtgcgggagatcgtggtccaggtggggcggaccggggccctg
acccccgtggcccacctcgatccggtcgaggtgtccggggtcaccgtgtcacgggccacc
ctccacaacgaggacgaggtgcgccggaaggacgtgcgggtcggggactgggtgatcgtg
cggcgggcgggggaagtgatcccggagatcgtccgcgcccttcccgaacgccggacggga
gaggaacgggagttccagatgcccgagctctgtccggcgtgtgggggcccagtggtgcga
ccggcgggcgaggcaacccaccgctgcgagaacctgtcctgccccgcgcggatcaaggag
gcgatcctccactacgcctcccgccgggcagcggacatccaggggttgggggagaagctc
gtggaccggctcgtcgagacagggctcgtcgcgcgcatctccgacctgtaccgactgcgc
cgcgaggacctcctggccgtggagcggatgggggagaagtcagctcagaacctgctcggt
gagatcgagcgctcgaaggggatgtcgctcgcccggctcatctttgccctcgggatccgc
catgtgggggagcgggtcgcggagttcctcgcggagcggttcccctcgctggaggccctc
tcccacgccacagtggaggagctgacggcgctccgcggtgtgggcccccagatcgcacag
agcatcgtttccttcttccgaaacgaggagaaccagcggctgatcgcggaactggcagcg
gtcggggtggatccccgcgccggggagccgcaggcaggccccctctcgggcaaggtcttc
gtgttcacggggaccctcggggggctgacccgtgacgaggcccagcgcctcgtggcctcc
cgcggaggtcgggtcgcctccaccgtgtcacgtcaggtggactacgtcgtcgccggggag
aacccggggagcaagctcgaccgggcgcgcgaactggggatccccgtgctcaccgaagcg
gagttccgccgcctcatcggctactag
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integrated database retrieval system
