Burkholderia anthina: JFN94_10200
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Entry
JFN94_10200 CDS
T07672
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bann
Burkholderia anthina
Pathway
bann03030
DNA replication
bann03410
Base excision repair
bann03420
Nucleotide excision repair
bann03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JFN94_10200 (ligA)
03410 Base excision repair
JFN94_10200 (ligA)
03420 Nucleotide excision repair
JFN94_10200 (ligA)
03430 Mismatch repair
JFN94_10200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bann03032
]
JFN94_10200 (ligA)
03400 DNA repair and recombination proteins [BR:
bann03400
]
JFN94_10200 (ligA)
Enzymes [BR:
bann01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JFN94_10200 (ligA)
DNA replication proteins [BR:
bann03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JFN94_10200 (ligA)
DNA repair and recombination proteins [BR:
bann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JFN94_10200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JFN94_10200 (ligA)
MMR (mismatch excision repair)
DNA ligase
JFN94_10200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JFN94_10200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QQK01484
UniProt:
A0A7T6VCP9
LinkDB
All DBs
Position
1:complement(2171928..2174003)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFGELQQLETDHPE
LVTPDSPTQRVGGEVANGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALDKTTDLAGS
VTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTQNVRTIRSIPLKLKGAH
VPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNREREVVHGAEGLLGFFHKVGEKRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAVEFV
MPTECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFADKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIDELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLVKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgtgccgcgtggctg
cgcgaccaactcgagcgggcgaaccacgcctactacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgtttggcgagctgcagcaactcgaaaccgatcatcccgaa
ctcgtgacgcccgattcgccgacgcaacgcgtcggcggcgaagtggcaaacggcttcacg
ccggtcgtccatgacgcaccgatgctgtcgttgaacaacggcttcgccgacgaggacatc
gtcgcgttcgacaagcgcgtcgccgatgcgctcgacaagacgaccgacctcgccggctcg
gtgaccgaccccgtcgaatacgcgtgcgagctgaagttcgacggactcgcgatctcgttg
cgctatgagcgcggcgtattcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgag
gacgtgacgcagaacgtccgcacgatccgctcgattccgctgaagctgaaaggtgcacac
gtcccggccctgctcgacgtgcgcggagaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaatgcggcg
gcgggcagcctgcgccagctcgacccgaagatcacagcgcagcgtccgctgtcgttcttc
gcttacggcatcggcgtgctggacggcatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgccggtgaaccgcgagcgcgaagtcgtgcacggtgcc
gaaggcttgctcggcttcttccacaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccggcgcgatgaacaggatcgcctcggcttcgtg
tcgcgcgcgccgcgctttgcacttgcgcacaaattcccggcgcaggaagcgctgaccagg
ctcgtcgcgatcgacgtgcaggtcggccgcaccggtgcgatcacgcccgttgcacggctc
gaacctgtgttcgtcggcggcgcgacggtgaccaacgcgacgctgcacaacgaggatgaa
gtacgccgcaaggacatccggatcggcgatacagtgatcgtgcggcgagcgggcgatgtg
attccggaggtcgtcggcgcgctgctcgatcgccggccggccgatgcggtcgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaggatcgagcggctgcccgacgaggcgatc
gcgcgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcatttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gaactgaatctcgtgcgcacgccggccgacctgttcaatctgggtttcgcgacgctcgcg
gaactcgaccggttcgccgacaagtccgcacagaacctgctcgactcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacggactcggcatccggcatgtcggcgagtcg
accgcgaaggatctcgcgaagcatttcggttcgctgaccccgatcatggacgcgtcgatc
gacgagctgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgcttcaccagttc
ttcgcggaagagcacaaccggaccgtgatcgagcaactgcgcgcgcccggcaaggtcacg
tggccggaagggccgcccgcgccgaaggcgccgcagggtgtgctggccggcaagacggtc
gtgttgacgggtacgctgccgaacctcacgcgtgacgccgcgaaagagatgctcgaagcg
gcgggcgcgaaagtcgcgggctcggtatcgaagaagacggattacgtggtcgcgggtgcc
gaggcgggcagcaagctcgtgaaggccgaggagctcggcattcccgtactggacgaagac
ggactgcaccaactcctggagggcaatacgccatga
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