Bartonella apihabitans: BBC0178_015070
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Entry
BBC0178_015070 CDS
T08729
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bapa
Bartonella apihabitans
Pathway
bapa03030
DNA replication
bapa03410
Base excision repair
bapa03420
Nucleotide excision repair
bapa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bapa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBC0178_015070
03410 Base excision repair
BBC0178_015070
03420 Nucleotide excision repair
BBC0178_015070
03430 Mismatch repair
BBC0178_015070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bapa03032
]
BBC0178_015070
03400 DNA repair and recombination proteins [BR:
bapa03400
]
BBC0178_015070
Enzymes [BR:
bapa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBC0178_015070
DNA replication proteins [BR:
bapa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBC0178_015070
DNA repair and recombination proteins [BR:
bapa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBC0178_015070
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBC0178_015070
MMR (mismatch excision repair)
DNA ligase
BBC0178_015070
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBC0178_015070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AQT42967
UniProt:
A0A1U9MCF3
LinkDB
All DBs
Position
complement(1650894..1653053)
Genome browser
AA seq
719 aa
AA seq
DB search
MQDISVDDLTAEQAKQELERLAKEIAHHDYLYNTKDQPEISDGEYDALRRRNNAIEQRFP
ELIRPDSPSRKVGATVSEKFEKVRHRIPMLSLDNAFSDQDVYDFVDRIRRFLRLKDNDEL
DISAEPKIDGLSLSLRYENGKLVTAATRGDGTVGENVTANALTISDIPHVLKGNYPDLIE
VRGECYMAHADFQALNERHEAEHKQVFANPRNAAAGSLRQLDASITARRKLKYFAYAWGE
VSRMPADTQLGMMDVFRSYGFTVNPLTKLFHSAEGLLKHFHAIEEQRADLDYDIDGVVYK
VNDLALQQRLGFISRSPRWAIAHKFPAERAMTILRAIDIQVGRTGALTPVARLEPITVGG
VVITNATLHNEDYIKGIGNKGETIRDGKDIRVGDTVVIQRAGDVIPQIVDIVEERRPKTA
EPFIFPHICPACGSHAVREEGEAVRRCTGGLICPAQAMERIRHFVSRNAFDIEGLGEKQV
EFFFDAKDENLAIRSPVDIFTLEARQKGALSKLENIEGFGRTSVHKLYDAINARRQIPLS
RFLFALGIRHVGEVNARRLARAYKNYKAFEEVALAARYPEENSGESGNDAWNELTNIEGI
GFIVAEAVVDFYGEEHNRNILQALLAEVTPLDEVLPVTDGSPVQGKTIVFTGSLERMSRD
EAKAMAERLGAKTAASVSKKTDLVVAGPGAGSKLTKAQELGVQIIDEDQWFKLIGEENA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatatttcagttgatgatctcacggccgaacaggcaaaacaggaattggaacgg
ctggcaaaagaaattgcccaccatgactatctctacaataccaaagatcagccggaaata
tcggatggcgaatatgatgcgctccgccggcgcaacaatgccattgaacagcgttttccg
gaattgatcaggccggattcgccttcccgcaaagttggcgccacagtttccgaaaaattt
gaaaaagtgcgtcatcgcatcccgatgctttcgcttgataatgctttttccgatcaggat
gtctatgattttgttgaccgtattcggcggtttttacggctgaaagataatgacgagctt
gatatcagcgccgagccgaagattgacggcttgtccttgtctttacgatatgaaaacggg
aaactcgtaacagcagcaacccgcggggatggaacagtgggtgaaaatgttaccgccaat
gcgttgacgatttccgatattccacatgttttgaaaggcaattatcctgatcttatcgag
gttaggggcgaatgttatatggcgcacgccgattttcaggcactaaacgagcgccatgaa
gctgaacacaagcaggtttttgccaatcccagaaatgctgctgcggggtcgctccgccaa
cttgatgccagcattaccgcgcggcgtaaactcaaatattttgcctatgcctggggcgaa
gtcagccgcatgccagccgatacgcaattgggtatgatggatgttttccgctcttatggc
tttacggtcaatccgttgacaaagctctttcattcggctgaaggactgctcaaacatttt
catgcaatcgaagaacaacgcgctgatcttgattatgatattgatggcgttgtctataag
gttaacgatcttgcgctccagcagcggctcggctttatctcgcgttcgccaagatgggca
attgcccataaatttccggccgagcgcgctatgaccattcttagagcaatcgatattcag
gtggggcgcacgggtgccttgacaccggttgcccgccttgaaccgattactgttggcggt
gtggtcattaccaatgctacactccataatgaggactatatcaaaggcattggcaataaa
ggggaaaccattcgtgacggaaaggatattcgtgttggtgacacggttgtcatccagcgc
gccggtgacgttattccgcaaattgtagacattgtcgaggaacgccgtccgaagacggcc
gagccatttatttttccccatatttgtccggcttgcggaagccatgcagtgcgggaagag
ggggaagcggttcgtcgctgcacgggtggtctcatctgtccggcgcaagcaatggaacgt
atccgccattttgtttcccgcaatgcctttgacatagagggacttggtgaaaaacaggtg
gaatttttcttcgatgccaaagacgaaaatttggcaatccgcagccccgttgacatattt
actcttgaagcacgccagaagggagctttgagcaagctcgaaaatattgaaggtttcggg
cgtacgtcggttcataaactttatgatgcaatcaatgcccgcaggcaaataccgctaagc
cggtttttatttgcgctcggtattcgccatgttggcgaagtcaatgcaagaagacttgcg
cgcgcttacaaaaactataaagctttcgaagaggtagctttggcggcacgttatccggaa
gaaaatagcggtgaaagcggaaatgatgcatggaatgagctcaccaatattgaaggcata
ggttttattgttgccgaagctgttgtcgatttttatggtgaggagcataatcgcaatatt
ttgcaagctttgcttgccgaggtaacacctttggatgaagtcttgccggttacagacggg
tcgccggtacagggcaaaacaattgtgtttaccggttcgctggagcgcatgtcccgtgac
gaagcaaaggcaatggcagaaagattaggggcaaaaactgcggcatctgtctcgaaaaag
acagatcttgtcgtggctggccccggagcaggatcaaaattgacaaaagcacaggagttg
ggagtgcaaattattgacgaagatcagtggttcaaactgattggtgaggaaaatgcgtaa
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