Bombiscardovia apis: KIMH_10050
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Entry
KIMH_10050 CDS
T09714
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bapk
Bombiscardovia apis
Pathway
bapk03030
DNA replication
bapk03410
Base excision repair
bapk03420
Nucleotide excision repair
bapk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bapk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KIMH_10050 (ligA)
03410 Base excision repair
KIMH_10050 (ligA)
03420 Nucleotide excision repair
KIMH_10050 (ligA)
03430 Mismatch repair
KIMH_10050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bapk03032
]
KIMH_10050 (ligA)
03400 DNA repair and recombination proteins [BR:
bapk03400
]
KIMH_10050 (ligA)
Enzymes [BR:
bapk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KIMH_10050 (ligA)
DNA replication proteins [BR:
bapk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KIMH_10050 (ligA)
DNA repair and recombination proteins [BR:
bapk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KIMH_10050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIMH_10050 (ligA)
MMR (mismatch excision repair)
DNA ligase
KIMH_10050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KIMH_10050 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDR54894
LinkDB
All DBs
Position
complement(1264343..1267051)
Genome browser
AA seq
902 aa
AA seq
DB search
MTNVQADHITIGSDEWISGLKPDDADAMKLGQLDVSSLSASQAQRLWARLASWVESDQIA
YYVNNSPVSSDAAYDARMRCLQALEADFPSLDTPQSPTHRVGGSFSNEFTSVRHPTRMMS
LDDVFSIDELREWYQGVREDLNWPENKPLAMTSEVKIDGLALNLLYRNGVLVQGLTRGDG
VTGEDITLNVRTISSIPQNLGGSPADIPEFVEIRGEVFMRFEDFDELNRQQEANGKPPFA
NPRNAAAGSLRQKDPHVTAQRSLSFYAHGIGRLTWGPKHPEGSHDEVVDQSQAYELYTKW
GIPVSPYNRIVNSFDEILEMIDHYGKHRSEIEHALDGIVVKVEDIALQRRLGSTSRAPRW
AIAYKYPPEEVNTELLNITVQVGRTGRITPVAILKPVYVAGSTVSRTTLHNPSEVKRKGI
LIGDTVVVRKAGDVIPELVGPVLEKRKGREDQLREFVMPQNCPSCGAKLAPAKENDKDIR
CPNVESCPAQLTERIIHLASRKAFDIEHLGEQAAIALTNPEENRPESVDVYTPNMRAIIV
KAGQEPVPYTPPEGTELPPIQEPVLKSEAGLFSLKIEDLKEVTAWRQVPILEETTIEGEK
WRTIRRKIGDSGLWYQAPAFYNLPKFDASEASEASEASEAAEIEQESATTDDSAGVQASQ
ETNKSTDTQPAETTQEQETAQEPAIQEPVGYLLREGQGEPGRNTLLMLEEIDKARSADLW
RVLVALSIRHLGPTSARVIARRYTSLEALEHADEEELAELDGVGPEIAHSVASWFEGARQ
EGDWRGQILQAWKAAGVGNHTEQITKPQILEGMTIVVTGTLEHFSRDSAKESIIERGGKA
SGSVSKKTTYVVLGANPGSKAAKAESLNVPTLNEEQFKQLIETGNPGELSQSEEEGTEPK
AQ
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
ttgactaacgtgcaagcagaccatataacaataggtagtgatgagtggatttctggtctg
aaaccagatgatgctgatgctatgaagttgggacaattagacgtctctagtttgagcgca
tcacaagcccaacgactgtgggctcgactggcctcgtgggtagagtcagaccaaattgct
tattatgtcaacaattctccggtttcatccgacgctgcctacgacgcgcgtatgcgctgc
ctacaggcgctcgaagctgactttccgagcctagacactccgcagtctccaactcaccgg
gtgggtggatccttctcgaatgagttcacttctgtacgccatcccacgcggatgatgagc
ttggatgatgtcttttcaatcgacgagctgcgcgaatggtatcaaggtgtacgcgaagat
ttgaattggcccgaaaataagcctttggccatgacttcggaggtgaaaattgacggcttg
gccctcaaccttctctaccgcaacggcgtactagttcaagggctcacccgcggcgatggc
gtaaccggtgaagatattacgctcaatgtgcgcacgattagctcgattccgcagaatttg
ggcggctctccggccgatattccagagtttgtagagattcgcggcgaagtctttatgcgt
tttgaagattttgatgaactcaaccgtcagcaggaagccaacggcaagccgcctttcgct
aaccctcgcaatgctgccgccggttcattgcggcaaaaagacccgcatgtaaccgctcag
cgcagcctgagtttctatgcacatggcattggacgtctgacatgggggcctaagcatcct
gagggcagccacgacgaggtagtggaccagtcgcaagcctacgagctgtataccaagtgg
ggcattcctgtctcgccatacaatcgcatcgtcaactctttcgatgagattcttgagatg
attgaccattacggcaagcatcgcagcgagattgagcatgcgctcgacggcattgtggtc
aaggtagaagacattgctttacagcgccgcttgggttcgacttcacgggctcctcgctgg
gctattgcttacaaatacccgcctgaagaggtcaatactgagctcctcaacatcaccgta
caggtgggcagaactggccgcattacaccagtggccatcttgaaacccgtgtatgtggcg
ggctcaacagtctctcgtaccaccctgcacaacccttctgaggtcaagcgcaagggcatt
ttgatcggcgatacggtcgtggtgcgcaaggctggagacgtgattcctgagctggtaggg
ccggttttggaaaagcgcaaggggcgcgaggaccagctgcgcgagttcgttatgcctcaa
aattgcccttcctgcggtgcaaaattggctccagcgaaggagaacgacaaggatattcgc
tgccccaatgtggaatcctgcccggcccagctaacagagcgcattatccacttggcttcg
cgcaaggctttcgacattgagcacttgggggagcaggcggctattgctctgaccaatcct
gaggagaatcgcccggagtcggtcgatgtgtatacgcccaatatgcgcgcaatcattgtg
aaagctgggcaggagcccgttccttatacacctcccgagggtactgaactgccgccgatt
caggagccagtcttgaagagcgaggccgggctgttttctctcaagattgaagacctcaaa
gaggtaactgcttggcggcaggtgccgattttggaggagactaccatcgagggcgaaaag
tggcgcacgattcgccgcaagattggcgactctggtctgtggtaccaggctccggccttc
tataatctgcccaagttcgatgcttctgaggcttctgaggcttctgaggcttctgaggct
gctgaaatagagcaagagagcgctacaactgacgattctgctggggttcaagcaagccaa
gagaccaacaaaagtactgacactcagccggctgagactacacaagaacaagagactgcc
caggagcccgctatccaggagccagtcggatacttgctgcgtgagggtcagggtgagccg
gggcgcaacaccctactcatgctcgaagagatcgacaaagcacgctcagcagacctctgg
agggtgctggtggccctctctatccgccacttaggtccaacgtcggccagggtcatagcc
cggcgctacacctcgcttgaggcccttgaacatgccgacgaggaagagttggctgagctg
gatggcgtgggccccgaaattgcccactccgtggcttcgtggtttgaaggagcccgccaa
gaaggtgattggcgcgggcagattttgcaggcttggaaagcggcaggcgtgggcaaccac
accgagcagattaccaaacctcaaatattggaaggcatgactatcgttgtgaccggtacc
cttgaacacttctctcgcgactcagctaaggaatccatcattgagcgcggcggcaaggct
tcgggatcagtcagtaaaaagaccacttacgtagtcttgggggctaatcccggttctaag
gcagccaaggctgagagtttaaatgtgcccactttgaacgaggagcagttcaagcagctc
atagagactggcaaccctggcgaactgtcgcagtctgaagaagaaggcactgagccaaag
gcgcagtaa
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