KEGG   Bartonella sp. A1379B: BA1379B_002880
Entry
BA1379B_002880    CDS       T05185                                 
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bara  Bartonella sp. A1379B
Pathway
bara03030  DNA replication
bara03410  Base excision repair
bara03420  Nucleotide excision repair
bara03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bara00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BA1379B_002880
   03410 Base excision repair
    BA1379B_002880
   03420 Nucleotide excision repair
    BA1379B_002880
   03430 Mismatch repair
    BA1379B_002880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bara03032]
    BA1379B_002880
   03400 DNA repair and recombination proteins [BR:bara03400]
    BA1379B_002880
Enzymes [BR:bara01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BA1379B_002880
DNA replication proteins [BR:bara03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BA1379B_002880
DNA repair and recombination proteins [BR:bara03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BA1379B_002880
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BA1379B_002880
   MMR (mismatch excision repair)
    DNA ligase
     BA1379B_002880
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BA1379B_002880
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT Zn_ribbon_NUD HHH_5 DUF4796_N DZR_2
Other DBs
NCBI-ProteinID: AQX18134
UniProt: A0AAC9VZJ3
LinkDB
Position
339608..341785
AA seq 725 aa
MDKNVIKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFP
ELIRADSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTI
EMTAEPKIDGLSLSLRYEAGKLVCAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIE
VRGEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGE
VSEMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYK
VNDLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGG
VVITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDT
PAFIFPHVCPVCGSHAVREEGETVRRCTGGLICSAQAIERICHFVSRNAFDIEGFGRKQV
EFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARREISLS
RFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNIEGIG
SRVGEAIIDFYQEVHNRDVLSALLKEVTPLHEAPIAIDYSPIVGKIIVFTGTLEHMSRDE
AKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLIDGHYIEN
FHLKQ
NT seq 2178 nt   +upstreamnt  +downstreamnt
atggacaaaaatgtgattaaaaacttaaccgctcttgaagcagcaagtgagttggaatgg
ttggcaaaagaaattgcacgtcatgatgtgttgtatcatcgtgatgaccagcctgaaatt
tctgatgcagaatatgatgctctttgtcgtcgtaatgaggaaattgaagctctttttcct
gaattaattcgtgcggactctccttcatctaaaattggtgcaccgatttctgaaaaattt
gaaaaatctattcatgcacagccaatgctgtctttggataatgcatttaattttgaagat
gttagtgaatttattgaacgtattcgtcgttttttacgattgccagaaacacagacaata
gaaatgacagccgaaccaaaaattgacggtttatctttatctttacgctatgaggcagga
aaacttgtatgtgctataacgcgtggaaatggatccataggtgaaaatgtcactacaaat
gcgcgaacaattgctgatattccagagattttacagggtaattttcctgatattattgag
gttcgtggtgaagtttatatgggacagaaagattttcagttactcaatattaaccaacag
aaagaagggaagttagttttcgcaaatcctagaaatgcagcagctggttccttacgtcag
cttgattcacggataaccgctagcagaaatcttaaattttttgcttatgcttggggtgaa
gtaagtgaaatgcctgctgaaagccaaataggaatgatgaaaaagcttaaagaatatggc
tttattattaatccattaacaaaggtttttgaaaaagtagaagatcttatttcatattat
cattctatcgaagaatgtcgtcaatcactagattatgatattgatgggattgtttataaa
gttaatgatttaatgctccaaacgcgtttagggtttgttgctcgttcaccacgttgggca
attgcacataaatttccagcagaaaaagctatagcatttttagaagatattgatattcag
gtaggtcgaactggggcattaacccctgttgctcgtcttacacctattactgtaggtggg
gttgtcattactaatgcaagtttgcacaatgaagattatattaaaggaatcggtcataag
ggtgagctaattcgtgaaggacgtgatatccgtgtgggcgatactgtgattatacaacgt
gctggcgatgtgattccccaaattgtcgatgtccttgttgaaaagcgttcaaaagatact
cctgcttttatttttcctcacgtatgtcctgtttgtgggagtcatgctgttcgtgaagaa
ggtgaaacagtccgccgatgtacgggtggacttatttgctccgcgcaagcaattgagcga
atttgtcattttgtttcgcgtaatgcctttgatattgaaggatttggtagaaaacaagtg
gaatttttttttcatgctcaagataaaacgctttgtattcgttcgccggtggatattttc
actttacaacgacgtcaagagaattctttgagacgtttggaaaatatggaaggttttgga
gttgtttcagttcgtaaactttataatgctattaatgctcgtcgtgaaatttctttaagt
cgttttttgtttgcgttaggcattcgtcacattggtgaggttaaggcacaacgtcttgct
cgtgcttaccaaaattacattgcttttgaaactgcagcgatgacggctattatgccgcct
gataaaaacagtgaaggtaatgagatttggaaggaattaaccaatattgagggaattgga
tctcgtgttggtgaagcgattattgatttttatcaggaggtgcataaccgtgatgtttta
tcggccttacttaaggaagtaactcctcttcatgaagcgcctattgcaatagattattca
ccaatagtagggaaaattattgtttttacgggaactttggagcatatgtcaagggacgaa
gcaaagtccttggcagaacggttaggtgctaagacatcgaattctatttctaaaaagact
gatcttcttgttgcaggtttcggagcaggatcgaaactagttaaagcacagcaattaggt
attgaggttctggatgaaaaaaactggctcaagttaattgatgggcattatattgagaat
tttcatctcaaacagtga

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