Bartonella sp. A1379B: BA1379B_002880
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Entry
BA1379B_002880 CDS
T05185
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bara
Bartonella sp. A1379B
Pathway
bara03030
DNA replication
bara03410
Base excision repair
bara03420
Nucleotide excision repair
bara03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BA1379B_002880
03410 Base excision repair
BA1379B_002880
03420 Nucleotide excision repair
BA1379B_002880
03430 Mismatch repair
BA1379B_002880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bara03032
]
BA1379B_002880
03400 DNA repair and recombination proteins [BR:
bara03400
]
BA1379B_002880
Enzymes [BR:
bara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BA1379B_002880
DNA replication proteins [BR:
bara03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BA1379B_002880
DNA repair and recombination proteins [BR:
bara03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BA1379B_002880
NER (nucleotide excision repair)
GGR (global genome repair) factors
BA1379B_002880
MMR (mismatch excision repair)
DNA ligase
BA1379B_002880
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BA1379B_002880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
HHH_5
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AQX18134
UniProt:
A0AAC9VZJ3
LinkDB
All DBs
Position
339608..341785
Genome browser
AA seq
725 aa
AA seq
DB search
MDKNVIKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFP
ELIRADSPSSKIGAPISEKFEKSIHAQPMLSLDNAFNFEDVSEFIERIRRFLRLPETQTI
EMTAEPKIDGLSLSLRYEAGKLVCAITRGNGSIGENVTTNARTIADIPEILQGNFPDIIE
VRGEVYMGQKDFQLLNINQQKEGKLVFANPRNAAAGSLRQLDSRITASRNLKFFAYAWGE
VSEMPAESQIGMMKKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYK
VNDLMLQTRLGFVARSPRWAIAHKFPAEKAIAFLEDIDIQVGRTGALTPVARLTPITVGG
VVITNASLHNEDYIKGIGHKGELIREGRDIRVGDTVIIQRAGDVIPQIVDVLVEKRSKDT
PAFIFPHVCPVCGSHAVREEGETVRRCTGGLICSAQAIERICHFVSRNAFDIEGFGRKQV
EFFFHAQDKTLCIRSPVDIFTLQRRQENSLRRLENMEGFGVVSVRKLYNAINARREISLS
RFLFALGIRHIGEVKAQRLARAYQNYIAFETAAMTAIMPPDKNSEGNEIWKELTNIEGIG
SRVGEAIIDFYQEVHNRDVLSALLKEVTPLHEAPIAIDYSPIVGKIIVFTGTLEHMSRDE
AKSLAERLGAKTSNSISKKTDLLVAGFGAGSKLVKAQQLGIEVLDEKNWLKLIDGHYIEN
FHLKQ
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaatgtgattaaaaacttaaccgctcttgaagcagcaagtgagttggaatgg
ttggcaaaagaaattgcacgtcatgatgtgttgtatcatcgtgatgaccagcctgaaatt
tctgatgcagaatatgatgctctttgtcgtcgtaatgaggaaattgaagctctttttcct
gaattaattcgtgcggactctccttcatctaaaattggtgcaccgatttctgaaaaattt
gaaaaatctattcatgcacagccaatgctgtctttggataatgcatttaattttgaagat
gttagtgaatttattgaacgtattcgtcgttttttacgattgccagaaacacagacaata
gaaatgacagccgaaccaaaaattgacggtttatctttatctttacgctatgaggcagga
aaacttgtatgtgctataacgcgtggaaatggatccataggtgaaaatgtcactacaaat
gcgcgaacaattgctgatattccagagattttacagggtaattttcctgatattattgag
gttcgtggtgaagtttatatgggacagaaagattttcagttactcaatattaaccaacag
aaagaagggaagttagttttcgcaaatcctagaaatgcagcagctggttccttacgtcag
cttgattcacggataaccgctagcagaaatcttaaattttttgcttatgcttggggtgaa
gtaagtgaaatgcctgctgaaagccaaataggaatgatgaaaaagcttaaagaatatggc
tttattattaatccattaacaaaggtttttgaaaaagtagaagatcttatttcatattat
cattctatcgaagaatgtcgtcaatcactagattatgatattgatgggattgtttataaa
gttaatgatttaatgctccaaacgcgtttagggtttgttgctcgttcaccacgttgggca
attgcacataaatttccagcagaaaaagctatagcatttttagaagatattgatattcag
gtaggtcgaactggggcattaacccctgttgctcgtcttacacctattactgtaggtggg
gttgtcattactaatgcaagtttgcacaatgaagattatattaaaggaatcggtcataag
ggtgagctaattcgtgaaggacgtgatatccgtgtgggcgatactgtgattatacaacgt
gctggcgatgtgattccccaaattgtcgatgtccttgttgaaaagcgttcaaaagatact
cctgcttttatttttcctcacgtatgtcctgtttgtgggagtcatgctgttcgtgaagaa
ggtgaaacagtccgccgatgtacgggtggacttatttgctccgcgcaagcaattgagcga
atttgtcattttgtttcgcgtaatgcctttgatattgaaggatttggtagaaaacaagtg
gaatttttttttcatgctcaagataaaacgctttgtattcgttcgccggtggatattttc
actttacaacgacgtcaagagaattctttgagacgtttggaaaatatggaaggttttgga
gttgtttcagttcgtaaactttataatgctattaatgctcgtcgtgaaatttctttaagt
cgttttttgtttgcgttaggcattcgtcacattggtgaggttaaggcacaacgtcttgct
cgtgcttaccaaaattacattgcttttgaaactgcagcgatgacggctattatgccgcct
gataaaaacagtgaaggtaatgagatttggaaggaattaaccaatattgagggaattgga
tctcgtgttggtgaagcgattattgatttttatcaggaggtgcataaccgtgatgtttta
tcggccttacttaaggaagtaactcctcttcatgaagcgcctattgcaatagattattca
ccaatagtagggaaaattattgtttttacgggaactttggagcatatgtcaagggacgaa
gcaaagtccttggcagaacggttaggtgctaagacatcgaattctatttctaaaaagact
gatcttcttgttgcaggtttcggagcaggatcgaaactagttaaagcacagcaattaggt
attgaggttctggatgaaaaaaactggctcaagttaattgatgggcattatattgagaat
tttcatctcaaacagtga
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