Bartonella krasnovii OE 1-1: D1092_05590
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Entry
D1092_05590 CDS
T06421
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
barn
Bartonella krasnovii OE 1-1
Pathway
barn03030
DNA replication
barn03410
Base excision repair
barn03420
Nucleotide excision repair
barn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
barn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1092_05590 (ligA)
03410 Base excision repair
D1092_05590 (ligA)
03420 Nucleotide excision repair
D1092_05590 (ligA)
03430 Mismatch repair
D1092_05590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
barn03032
]
D1092_05590 (ligA)
03400 DNA repair and recombination proteins [BR:
barn03400
]
D1092_05590 (ligA)
Enzymes [BR:
barn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1092_05590 (ligA)
DNA replication proteins [BR:
barn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1092_05590 (ligA)
DNA repair and recombination proteins [BR:
barn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1092_05590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1092_05590 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1092_05590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1092_05590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QEE12461
UniProt:
A0A5B9D2Q0
LinkDB
All DBs
Position
complement(1276418..1278577)
Genome browser
AA seq
719 aa
AA seq
DB search
MNKDRIKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFP
DLVRIDSPSHKIGAPVLEKFEKSVHTQPMLSLDNAFSFEDVTEFVERVRRFLRFSETQML
EITAEPKIDGLSLSLRYEKGRLVCAATRGDGTVGENVTANARTISDIPKVLQGKFPDILE
VRGEVYMGREDFQALNISQQEKGKLIFANPRNAAAGSLRQLDSRITASRKLRFFAYACGE
VSEIFAESQMEMMKKLKEYGFIINPLTKVFKKVEEIISYYHDIEERRYSLNYDIDGIVYK
VNDLMLQKRLGFVSRSPRWAIAHKFPAEKAVTLLEGIDIQVGRTGALTPVARLTPITVGG
VVVTNASLHNEDYIKGIGHKGEPIREGRDIRIGDTVIIQRAGDVIPQVVDIVVEKRPKDS
SAFVFPHLCPACGSHAVREAEEAVRRCTGGLICPAQAIERIRHFVARNAFDIEGLGKKQV
EFFFHAQDEALRIQTPADIFTLQRRQENSLVRLENMEGFGAVSVRKLYDAINARRKIPLS
RFLFALGIRHVGEVNARRLARAYQTYTAFETAAMEALMPCEQEDKEGNEAWLELTNIEGI
GPQVGSAIVDFYKEAHNREVLAVLLEEVTPLDEEPVLAASSSLAGKIIVFTGTLTRMSRD
EAKALAERLGAKTSGSLSKKTDLLVAGPGAGSKLTKAGELGVEVIDEEAWLQLIEEQNV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggacagaattaaaaaccttactgctcttgaagcagaaagtgaattagagtgg
ttagcaaaagagattgcacgtcatgatgtgctttataatcgtgatgatcaacctgaaatt
tctgatgcagaatatgatgctcttcgccggcgtaatgcggaaattgaagctctctttcct
gaccttgttcgtatagactctccttcacataaaattggagcaccggttttagagaagttt
gaaaaatctgttcatacacaaccgatgctttcccttgataatgcgtttagctttgaagat
gtcactgaatttgttgaacgtgtgcgtcgttttttacggttttcagaaacacaaatgtta
gaaataacagcagagccaaaaattgatggtttgtcgttgtctttgcgctatgaaaagggg
cggcttgtatgtgccgcaacgcggggtgatggaactgttggtgaaaatgtgacagcgaat
gcacgaacaatttctgatattccaaaagttttgcaaggaaaatttcctgatattcttgag
gttcgcggtgaagtttatatggggcgggaagatttccaagcacttaatatcagccagcaa
gagaaggggaagctaatctttgccaatcctcgaaatgcggcggctggatcgctgcgccaa
ctggattcacggataactgccagtagaaagctgcgattttttgcttatgcttgtggtgaa
gtgagtgaaatatttgcagaaagccaaatggagatgatgaaaaagctcaaagaatatggc
tttattatcaatccattaacaaaagtttttaagaaagtagaagaaattatttcctattat
catgatatagaagaacgccgttattctttaaactatgatattgatggcattgtttataag
gttaatgatttgatgctccaaaagcggttgggatttgtttctcgttcgccgcgttgggct
attgcgcataaatttccagcagaaaaggctgtgactcttttagagggtattgatattcaa
gtggggcgcaccggtgcattaacacctgttgcgcgtcttacgccgatcactgttggtggg
gtggtggtgaccaatgctagtttgcataatgaggattatattaaaggaattggtcataaa
ggagagcccattcgtgaggggcgtgatattcgtatcggcgatacggtgattatacaacgt
gctggtgatgtaattcctcaagttgttgatattgtagtggaaaaacgtccaaaagattct
tctgcttttgttttccctcatctctgccctgcttgtgggagtcatgcggttcgtgaagca
gaagaagcggtgcgtcgatgtacaggggggcttatttgtcctgcacaagcaattgagcgt
attcgtcatttcgttgcgcgcaatgcttttgatattgagggtttgggtaaaaaacaagta
gagttttttttccacgctcaagatgaagcgcttcgtattcagacacccgctgatattttt
actttacaacggcgtcaagaaaactcgttagttcgtttggaaaatatggaaggttttggt
gctgtttctgtgcggaaattgtatgatgccattaatgcacgtcgcaaaattcccttaagc
cgttttttgtttgctctagggattcgtcatgttggtgaggtgaatgcgcggcgtcttgca
cgcgcttatcaaacttatacagcttttgaaactgcggcaatggaagcacttatgccatgt
gagcaggaagataaagaaggtaatgaagcttggctagagcttaccaatatcgaaggaatt
ggaccacaggtaggcagtgcgattgttgatttttataaggaagcccataatcgtgaggtt
ttggctgttttgcttgaagaagtgactcctctcgatgaggagcctgttttggcagcatct
tcatcgttagcgggaaagatcatagtttttacaggaactttgacgcgtatgtctcgcgat
gaagcaaaagcattagcagagcgattaggggcaaagacttccggttcactctctaaaaaa
acagatcttcttgttgcagggcctggagcgggatcaaaattgactaaagctggggagtta
ggtgttgaggttatcgatgaagaggcttggctacagctgattgaagaacagaatgtttag
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