Bartonella sp. JB15: BJB15x_008490
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Entry
BJB15x_008490 CDS
T05113
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bart
Bartonella sp. JB15
Pathway
bart03030
DNA replication
bart03410
Base excision repair
bart03420
Nucleotide excision repair
bart03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bart00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJB15x_008490
03410 Base excision repair
BJB15x_008490
03420 Nucleotide excision repair
BJB15x_008490
03430 Mismatch repair
BJB15x_008490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bart03032
]
BJB15x_008490
03400 DNA repair and recombination proteins [BR:
bart03400
]
BJB15x_008490
Enzymes [BR:
bart01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BJB15x_008490
DNA replication proteins [BR:
bart03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BJB15x_008490
DNA repair and recombination proteins [BR:
bart03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BJB15x_008490
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJB15x_008490
MMR (mismatch excision repair)
DNA ligase
BJB15x_008490
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJB15x_008490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Zn_ribbon_NUD
CwsA
DZR_2
EAD10
Motif
Other DBs
NCBI-ProteinID:
AQX28240
LinkDB
All DBs
Position
complement(925859..928015)
Genome browser
AA seq
718 aa
AA seq
DB search
MDKDVIKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNMAIEVLFP
ELIRANSPTSKIGAPISEKFEKSVHTQPMLSLDNAFNVKDVSEFVERIRRFLRFPETQII
EMTAEPKIDGLSLSLRYETGKLVRAVTRGNGYIGENVTTNAQTIADIPQVLQGKFPDIIE
VRGEVYMGQKDFQLLNVSQQKEGKLVFANPRNAAAGSLRQLDSRITASRCLKFFAYAWGE
VSEMPAESQMEMMEKLKEYGFIINPLTKVFEKVEDLISYYHSIEECRQSLDYDIDGIVYK
VNDLMLQTRLGFVSRSPRWAIAHKFPAEKAIALLEGIDIQVGRTGALTPVARLTPITVGG
VVVTNASLHNEDYIKGIGHKNESIREGRDIRVGDTVIVQRAGDVIPQIVDVLVEKRPKDT
PAFVFPHFCPVCGSYAVREKGEAVRRCTGGLICSAQAIERICHFVSRNAFDIEGFGRKQV
EFFFHTQDEMLCIHSPADIFTLQRRQENSLRRLENMEGFGAVSVRKLYNAINARRKISLG
RFLFALGIRHVGEVNAQRLARAYKNYDAFETAAMSAIMPNDKFSEGNKIWMELTNIEGIG
SRVGEAIIDFYQEVHNRDVLLALLKEVTPFHEVPMAIDCSLVAGKIIVFTGTLEYMSRDE
AKALAERLGAKTSNSISKKVDFLVAGFGAGSKLAKAQQLGVEVLDEKSWLKLVDGHYI
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggatgtgattaaaaacttaactgctcttgaagcagcaagtgagttggaatgg
ttggctaaagaaattgcacgtcatgatgtgctttatcaccgtgatgatcagcctgagatt
tctgatgcagaatatgatgctctccgtcgtcgtaatatggcaattgaagttctatttcct
gaattaattcgtgcgaattctcctacatctaaaattggcgcaccgatttctgagaaattt
gaaaaatctgttcatacacagccaatgctgtctttagataatgcatttaatgttaaagat
gttagtgaatttgttgaacgtattcgtcgttttttacgatttccagaaacacagataata
gaaatgacagctgagccgaagattgacggtttatctttatctttacgttatgagacagga
aaacttgtacgtgctgtaacgcgtggaaatggatatataggtgaaaatgttactacgaat
gcgcaaacaattgctgatattccacaggttttacaaggtaaatttcctgatattattgag
gttcgtggtgaagtttatatgggacagaaagatttccagctacttaatgttagtcaacag
aaagaagggaagttagtttttgcgaatcctaggaatgcagcagctggttctttacgtcag
cttgattcacgaataactgcaagcagatgtcttaaattttttgcttatgcttggggtgaa
gtgagtgaaatgcctgccgaaagccagatggagatgatggaaaagcttaaagaatatggt
tttattattaatccgttaacaaaggtttttgaaaaagtagaagatcttatttcatattat
cattctatcgaagaatgccgtcaatcattagactatgatattgatgggatcgtttataaa
gttaatgatttgatgctccaaacgcgtttgggatttgtatctcgttcgccacgttgggca
attgcacataaatttccggcagaaaaagctatagcacttttagagggtattgatattcag
gtaggtcgaactggagcattaacacctgttgctcgtcttacacctattactgtaggtggt
gttgtagttaccaatgcaagcttgcataatgaagactatattaaaggaattggccataag
aatgagtcaattcgtgaggggcgtgatatccgtgtcggtgatactgtgattgtacaacgt
gctggtgatgtgatcccccagattgttgatgttcttgttgaaaagcgtccaaaagatact
cctgcttttgtttttcctcacttttgtcctgtttgtggaagttatgctgttcgtgaaaag
ggtgaagcagttcgccggtgtacgggtgggcttatttgttcggcgcaagcaattgaacgt
atttgccattttgtttcgcgtaatgcctttgatattgagggatttggtagaaaacaagtg
gaatttttctttcacactcaagatgaaatgctttgtatccattcgccagcagatattttt
actctacaacgacgtcaggaaaattctctgagacgtttggagaatatggaaggttttgga
gctgtttcagttcgtaaactttataatgccattaatgctcgtcgcaaaatttctttaggt
cgttttttgtttgcattaggaattcgtcatgttggtgaggttaatgctcaacgtcttgcc
cgtgcttacaaaaattatgatgcttttgagactgcggcgatgtcagccattatgccgaat
gataaattcagtgaaggtaataaaatttggatggaattaaccaatattgagggaattggt
tctcgtgttggtgaagcgattattgatttttatcaagaagtccataaccgcgacgtttta
ttggccttgcttaaagaagtcactccttttcatgaggttcctatggcaatagattgttcg
ttagtagcaggaaaaattattgtttttacgggaactttggaatatatgtcgagggatgaa
gcgaaagccttggcggaacggttaggtgctaagacatccaattctatttctaaaaaagtt
gattttcttgttgcaggttttggagcaggatcgaaattggctaaagcacaacaattaggt
gttgaggttctagatgaaaaaagctggctcaagttagttgatgggcattatatttaa
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