Bifidobacterium asteroides: BAST_1067
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Entry
BAST_1067 CDS
T02271
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bast
Bifidobacterium asteroides
Pathway
bast03030
DNA replication
bast03410
Base excision repair
bast03420
Nucleotide excision repair
bast03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAST_1067
03410 Base excision repair
BAST_1067
03420 Nucleotide excision repair
BAST_1067
03430 Mismatch repair
BAST_1067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bast03032
]
BAST_1067
03400 DNA repair and recombination proteins [BR:
bast03400
]
BAST_1067
Enzymes [BR:
bast01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAST_1067
DNA replication proteins [BR:
bast03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAST_1067
DNA repair and recombination proteins [BR:
bast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAST_1067
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAST_1067
MMR (mismatch excision repair)
DNA ligase
BAST_1067
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAST_1067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFU71645
LinkDB
All DBs
Position
complement(1393307..1395895)
Genome browser
AA seq
862 aa
AA seq
DB search
MHDRKAQKDAQQTSDEGGNTDSRPRPGTDRWIASLQPDDADAMRLGELDLDSLGAQQAQR
LWSRLAAWVESDQVAYYIDDAPVSSDAAYDARMRCLQELESHFPSLDTPQSPTHRVGGTF
SNDFASVRHPSQMLSLDDVFSVAELRQWYDGLRNELDWPQGKALPMTSEVKIDGLALNLL
YRNGVLEQGLTRGDGVTGEDITLNVRTISSIPQNLSGPARDIPEFVEVRGEVFMRFDDFN
ALNEQQEQEGKAPFANPRNAAAGSLRQKDPRITASRRLSFYAHGLGSLRWGPAHPKGTHD
EVIDQSQAYDLYKQWGIPVSPHNRVITSFDQILDMIDYYGQHRNDIEHALDGIVVKLQDR
DLQRRLGATSRAPRWAVAYKYPPEEVNTRLLDITVQVGRTGRITPVAVLTPVTVAGSTVS
RTTLHNASEVKRKGILIGDTVVVRKAGDVIPELVGPVIEARKGRERDLRPFVMPETCPSC
GARLAPAKEGDVDIRCPNVESCPAQLTERIIHMASRKALDIEHLGEQSAIALTNPDENRP
DSVEVYAPGLREVLVDQGGQAAPYQPDPDLKLPSRQEPVLTSEAGLFDLKVEDLRQVYVW
REVPLMERVEVEGRQGRATTKRRTGGSGLWYRVPAFYNLPKSAQASQGERAMNSHETQVQ
EAALDSADAQPSRNTLQMLEEIDKARHADLWRVLVALSIRHLGPTSARAIATRFPSLKAV
EEASVEDLSELDGVGPEIAHSIHDWFQGACQPDDWRGRILDAWQAAGVGAHVERSTKPQT
LKGMTVVVTGSLEDFSRDSAKEAILERGGKASGSVSKKTTYVVVGANPGSKADKAESLGL
PILDEAAFHRLLDTGDPNPAQG
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacagaaaagctcagaaagatgctcagcaaaccagtgatgagggcgggaatacc
gattccaggcccaggccgggcactgaccgatggatagcctccctgcagcccgacgatgct
gatgccatgcgactgggggagctggaccttgattctctgggagcccaacaggcccagcgt
ctctggtccaggctggccgcctgggtggagtccgaccaggtcgcctactacatagacgat
gcgccggtctcctccgacgcggcctatgacgccagaatgcgctgcctgcaggagctggag
tcccactttcccagtctggataccccccagtcgccgacgcaccgggtcggggggaccttc
tccaacgacttcgcctcagtccgtcacccctctcagatgctcagcctggatgacgtcttc
agtgtcgccgagctgcgccagtggtatgacgggcttcgcaacgagctcgactggccgcag
ggcaaggccctgcccatgaccagcgaggtcaagattgacggcctggccctcaacctcctc
taccgcaacggggtcctggagcagggcctgaccaggggggacggagttaccggggaggac
atcaccctgaacgtcaggaccatttcgagcattccgcagaacctgtcgggaccggcccgc
gatatccccgagttcgtggaggtccgtggtgaggtcttcatgcggttcgatgacttcaac
gccctgaacgaacagcaggagcaggagggcaaggcgccctttgccaaccctcgcaacgcc
gccgccgggtcgctgaggcagaaggatccgcgcatcacggccagccgccgtctgagtttc
tacgcccatggtctgggttcactgaggtggggcccggcccatcccaaggggacccacgac
gaggtcatcgaccagtcccaggcctacgacctctacaagcagtggggaattccggtctcc
ccccataaccgggtcatcacctccttcgaccagattctggatatgatcgactattacggc
cagcaccgtaatgacatcgagcacgccctggacggcatcgtcgtcaagctccaggaccgg
gatctccagcgcaggctgggagccacctcccgtgccccccgctgggccgtggcctacaag
tacccgccggaggaggtcaataccagacttctggacatcaccgtccaggtaggccggacc
ggccggatcaccccggtggctgttctcaccccggtcaccgtggcagggtccacggtctcc
aggaccaccctccacaacgcatccgaggtcaagcgcaagggcattctgatcggggatacg
gttgtggtccgcaaggcgggcgatgtgatccccgagctggtcggaccggttatcgaagcc
aggaaggggcgtgaaagggatctgagacccttcgtcatgcctgagacctgccccagctgc
ggtgcccggctggccccggccaaggagggcgatgtggacatccgctgccccaatgtggag
tcctgcccggcccaactgaccgagcggatcatccacatggcctcgcgaaaggcgctggac
atagagcatctgggggagcagagcgccatagcactgaccaaccccgatgagaaccggccc
gattccgtggaggtctacgctcccggtctgcgtgaggtcctggtcgaccagggcggccag
gcagccccctaccagccggacccggacctgaaacttccatctcgtcaggaacctgtcctg
accagtgaggcgggcctgttcgacctgaaagtggaggacctgcgccaggtctatgtctgg
cgtgaggttcccctgatggagcgggtggaggtcgaaggccggcagggacgtgccacaacc
aagcgtcggacaggcggcagcggcctctggtaccgtgtgcctgccttctataacctgccc
aagagcgctcaggcgagccagggcgagcgggccatgaacagccatgagacccaggtccag
gaggctgctctggacagtgcggatgcccaaccctccaggaataccctgcagatgcttgaa
gagattgacaaggccaggcatgccgacctgtggagggtcctggtggccctgtccatccgg
cacctgggaccgacatcggcccgggccatagccacccgtttcccgtcgctcaaggccgtg
gaggaggccagcgtggaggacctgtccgaactggacggtgtgggccccgagatcgcgcac
tccatccacgactggttccagggcgcctgccagcccgacgactggcgtggacgcatcctg
gatgcctggcaggcagccggggtgggcgcccacgtcgagcgcagcaccaagccgcagacc
ctaaaggggatgaccgtggtggtcactggcagtctggaggacttctccagggactccgcc
aaagaggccatcttggaacgcggcggcaaggcctctggatccgtcagtaaaaagaccacc
tatgtggtggtgggcgccaacccgggttccaaggccgacaaggctgagagcctggggcta
cccatcctggacgaggcggccttccaccgcctgcttgacaccggcgaccccaacccagcc
cagggttga
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integrated database retrieval system
