Bradyrhizobium australafricanum: QA635_13540
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Entry
QA635_13540 CDS
T09096
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baut
Bradyrhizobium australafricanum
Pathway
baut03030
DNA replication
baut03410
Base excision repair
baut03420
Nucleotide excision repair
baut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QA635_13540 (ligA)
03410 Base excision repair
QA635_13540 (ligA)
03420 Nucleotide excision repair
QA635_13540 (ligA)
03430 Mismatch repair
QA635_13540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baut03032
]
QA635_13540 (ligA)
03400 DNA repair and recombination proteins [BR:
baut03400
]
QA635_13540 (ligA)
Enzymes [BR:
baut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QA635_13540 (ligA)
DNA replication proteins [BR:
baut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QA635_13540 (ligA)
DNA repair and recombination proteins [BR:
baut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QA635_13540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QA635_13540 (ligA)
MMR (mismatch excision repair)
DNA ligase
QA635_13540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QA635_13540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WFU35370
LinkDB
All DBs
Position
2939774..2941921
Genome browser
AA seq
715 aa
AA seq
DB search
MATKAKKALVDVDKLTKPQAKVELMRLALELEGHDKRYYQDDAPSVTDAEYDALRQRYNA
IEKRFPEFVTAESPSQKVGAAPSGRFRKVRHSLPMLSLDNAFAEADVVDFVGRITRFLKL
PDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGRN
VPDNCEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGFF
AYAWGEMSAMPEDTQTGMIHWFERCGFKTNPLTKLCHSVEELIAFHRKIEEQRAELDYDI
DGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKLE
PVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVID
KRPKSAKEFHFPKKCPCPLHTDVVREETAAGEEGSRARCTGEFACPFQKVEHLILFVSRR
AFDIDGLGVKQLQYFFDEGWVKEPADIFTLQKRNAKLKLEDIEGYGETSVRNLFAAIDSR
RRIGLERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEEAMAEMDALDQIG
DTVIKSIADYFGESHNRGIVERLTGELDEIIDAEKPKSNSAVAGKTVVFTGSLEKMTRDE
AKARAERLGAKAAGSVSKKTDYVVAGPGAGSKLAEAQKHGVQVLTEDEWLKLIGE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaagccaagaaagcgctggtcgacgtcgacaagctcaccaagccccaggcc
aaggtcgagttgatgcgccttgcgctcgagctcgaaggtcacgacaagcgctactatcag
gacgatgcgccgagcgtcaccgacgccgaatacgacgcgctgcggcagcgctacaatgcg
atcgagaaacgcttccctgaattcgtcaccgcggaatcgccgtcgcagaaggtcggcgcc
gcgccgtcggggcgcttcaggaaggttcgtcattcgctgccgatgctgtcgctcgacaac
gcgttcgcggaagccgacgtggtcgacttcgttggacgcatcacgcgcttcctcaagttg
ccggatgacaagatcgatttctcggccgagccgaagatcgacgggctctcgatgtcgctg
cgctacgagggcggcgagctcgtcaccgcggcaacccgcggcgacggcgccgagggcgag
gacgtcaccgccaacatccgcacgctcgaggacgtgccgcagaagctgaagggccgcaac
gtgcccgacaattgcgaggtgcgcggcgaggtctatatgaccaagaaggcgttcctcgcg
ctgaacgagcggcagaaggcggccggcgacaccatcttcgccaatccgcgcaattcggcg
gccggttcgctgcggcagaaagatcccacaatcactgcctcgcggccgctcggcttcttc
gcctacgcctggggcgagatgagcgcgatgccggaggatacccagaccggcatgatccac
tggttcgagcggtgcggcttcaagaccaatccgctgaccaaattgtgccactcggtcgag
gagctgattgcgttccatcgcaagatcgaggagcagcgcgccgagctcgactacgacatc
gacggcgtcgtctacaaggttgatcgcatagactggcaggagcggctcggcttcgtgtcg
cgcacgccgcgctgggcgatcgcgcacaaattcccggccgagcgcgccatgacggtgctg
cgcgacatcgagatccaggtcgggcgcaccggctcattcacgccggtcggcaagctcgag
ccggtcggtgtcggcggcgtgatcgtgcagaacgtcacgctgcacaatgaggactacatc
aagggcatcggcaacaagggcgaggtgctgcgcgagggacgcgacatcaggatcggcgac
accgtggtgatccagcgcgccggcgacgtgatcccgcaggtcgtcgacgtcgtgatcgac
aagcggccgaagagcgcgaaggaattccacttcccgaagaaatgcccgtgcccgctgcac
accgacgtggtgcgcgaggagaccgcggccggcgaggagggctcgcgcgcccgctgcacc
ggcgagttcgcctgtccgttccagaaggtcgaacacctcattctgttcgtgtcgcgccgc
gccttcgacatcgacggtctcggcgtgaagcagttgcaatatttcttcgacgagggatgg
gtcaaggagccggctgatatcttcacgctgcaaaagcgcaacgcgaagctgaagctggag
gacatcgaaggctacggtgagacctcggtgcgcaatctgttcgccgcgatcgacagccgc
cgcaggattggcctggagcgcttcatctacgcactcggcatgcgccatgtcggcgagacc
accgcgctggcactggcgcgcggctatggctcctgggacgcgttccacgatgcctgcctc
aaggtcgccaagggcgacgaggaagcgatggcggagatggatgcgctcgaccagatcggc
gacaccgtgatcaagagcatcgccgactatttcggcgagagccacaatcgcggcatcgtc
gagcggctgaccggagagctcgacgagatcatcgacgccgagaagccgaagagcaattcg
gcggtggccggcaagaccgtggtgttcaccggatcgctcgaaaagatgacacgtgacgag
gccaaggcgagggccgagcggctgggcgccaaggcggccggctcggtgtcgaagaagacc
gactatgtcgtcgcggggccgggcgccggctcgaagcttgccgaagcgcagaagcacggc
gtccaggtgctcaccgaggacgagtggctgaagctgatcggggagtag
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