Bacillus velezensis FZB42: RBAM_007020
Help
Entry
RBAM_007020 CDS
T00582
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bay
Bacillus velezensis FZB42
Pathway
bay03030
DNA replication
bay03410
Base excision repair
bay03420
Nucleotide excision repair
bay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBAM_007020 (ligA)
03410 Base excision repair
RBAM_007020 (ligA)
03420 Nucleotide excision repair
RBAM_007020 (ligA)
03430 Mismatch repair
RBAM_007020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bay03032
]
RBAM_007020 (ligA)
03400 DNA repair and recombination proteins [BR:
bay03400
]
RBAM_007020 (ligA)
Enzymes [BR:
bay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBAM_007020 (ligA)
DNA replication proteins [BR:
bay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBAM_007020 (ligA)
DNA repair and recombination proteins [BR:
bay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBAM_007020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBAM_007020 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBAM_007020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBAM_007020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ABS73087
UniProt:
A7Z261
LinkDB
All DBs
Position
681766..683772
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTGCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgattgccatagaggaagagcacccggaactcagaacgcctgattcgccc
acacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcatggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgacctccgcgattttgaccgccgcgtc
cgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaagcg
ctcaatgaagaaaggctgaaacatgaagaggagccgttcgccaatccccggaatgcggct
gcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcaaggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgatagat
gaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaaatt
gacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacggca
aaaagcccgcgctgggcgattgcgtataaattcccggcggaagaggtcgtgacaaaactg
ctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgaccgccgttctggaa
ccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatcatc
cctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaatatg
ccgaccggatgccctgagtgcgaaagcgaacttgtccgcattgaaggagaagtcgcgctg
cgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtctca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttgtataagctgacgaaagagcaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagtcacggaagaagag
ctgcttgcggtggatgaaatcggcgaaaagatggccgatgccgttatcacctatttccgc
aaagaagaaatgcttgagctattgaatgaacttgaggaactcggtgtgaacacactctac
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaaccatc
gtgttgaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagatttgctgattgccggagaa
gcggccggaagcaagctgacaaaagcgcaggaattaaatattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
DBGET
integrated database retrieval system
