Bacillus amyloliquefaciens TA208: BAMTA208_03090
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Entry
BAMTA208_03090 CDS
T01824
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baz
Bacillus amyloliquefaciens TA208
Pathway
baz03030
DNA replication
baz03410
Base excision repair
baz03420
Nucleotide excision repair
baz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAMTA208_03090 (ligA)
03410 Base excision repair
BAMTA208_03090 (ligA)
03420 Nucleotide excision repair
BAMTA208_03090 (ligA)
03430 Mismatch repair
BAMTA208_03090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baz03032
]
BAMTA208_03090 (ligA)
03400 DNA repair and recombination proteins [BR:
baz03400
]
BAMTA208_03090 (ligA)
Enzymes [BR:
baz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAMTA208_03090 (ligA)
DNA replication proteins [BR:
baz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAMTA208_03090 (ligA)
DNA repair and recombination proteins [BR:
baz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAMTA208_03090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAMTA208_03090 (ligA)
MMR (mismatch excision repair)
DNA ligase
BAMTA208_03090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAMTA208_03090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEB22805
LinkDB
All DBs
Position
624476..626482
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAFMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKQCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTVCPECESELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKTQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWDEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagatgaattgcgccgcaccatcgatcagtac
agttacgaatattacaccttagatgaaccgagcgtaccggattccgagtacgacagactg
atgcaggagctgattgcgatagaagaagagcacccggagctcagaacgcctgactcgccc
acacagcgggtcgggggagcggtgcttgaatcatttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgatgatcttcgcgattttgaccgccgcgtc
cgtcaggctgtcggggacggcgtcgcttacaatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaaca
acgggcgaagatattacggaaaacttaaaaacgatccgcaacattccgctgaaaatgaaa
cgaaacctttccatagaagtgcgcggagaggcgttcatgccgaaacagtcatttgaagcg
ctcaatgaagaacggctgaaacatgaagaggagccgttcgccaatccccggaatgctgct
gcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcagggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaacaatgcgccacgatagat
gaagtaattgaaatgatcgaggagctgcaggcgaagcgggccgacctcccgtatgaaatt
gacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacggca
aaaagcccgcgctgggcgattgcatataaattcccggcagaagaggtcgtgacaaaactt
ctcgatatcgaactgaatgtcggaagaacaggcgtcattacgccgaccgccgttctggaa
ccggtaaaagtcgcgggaacgacggtctcaagagcatcgcttcataacgaagatttaatt
aaagagaaggatatccgcattctcgataaagtggtcgttaaaaaagcgggcgacattatc
cctgaggtcgtcaatgtcttaattgaacagcggaccggagaagaaaaagaattcaatatg
ccgaccgtctgccctgagtgcgaaagcgagcttgtgcgcattgaaggagaagtcgcgctg
cgctgcatcaacccggaatgtccggcgcaaatcagagaaggcctgatccactttgtttca
cgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttatataagctgacaaaagaacaggtcatccggctt
gagcggatgggagaaaaatcaactgacaatctgatcagctccatccaaaaatcgaaagag
aattcattggaacgcctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaagag
ctgctggcagtagatgaaatcggtgaaaagatggccgatgccgtcatcacctatttccga
aaagaagaaatgcttgagcttttgaatgaactggaagagctcggtgtgaacacactctat
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaaacgcagattgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccggagaa
gcggccggaagcaagctgacaaaagcgcaggaattaaacattgaagtatgggatgaagca
cagctattgggagagctaaagaaataa
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