Bdellovibrio bacteriovorus HD100: Bd0057
Help
Entry
Bd0057 CDS
T00159
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03030
DNA replication
bba03410
Base excision repair
bba03420
Nucleotide excision repair
bba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bd0057 (lig)
03410 Base excision repair
Bd0057 (lig)
03420 Nucleotide excision repair
Bd0057 (lig)
03430 Mismatch repair
Bd0057 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bba03032
]
Bd0057 (lig)
03400 DNA repair and recombination proteins [BR:
bba03400
]
Bd0057 (lig)
Enzymes [BR:
bba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bd0057 (lig)
DNA replication proteins [BR:
bba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bd0057 (lig)
DNA repair and recombination proteins [BR:
bba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bd0057 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bd0057 (lig)
MMR (mismatch excision repair)
DNA ligase
Bd0057 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bd0057 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
GN3L_Grn1
Motif
Other DBs
NCBI-ProteinID:
CAE77738
UniProt:
Q6MRL9
LinkDB
All DBs
Position
complement(50579..52633)
Genome browser
AA seq
684 aa
AA seq
DB search
MPDAFCRDWTSEMGANYSMSKKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLD
IEKNPKGLDLSDSPSQRVGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNT
EDPVEYLCELKFDGLSMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNP
PPLLEVRGEVLMFKEDFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFG
YALGAVEGETFNTQKNIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKL
PFDIDGVVIKVNSLRLQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPV
AIMKPVKVGGVTVTNATLHNQDEITRKDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADR
LPYSIPERCPACDSVAVKAEGEVVTRCVNPLCIAVVKESLKHFVARRAMNIDKVGDRLIE
TLVDNKLLTRFSDFYRLTKEQILSLERQGDKSADNIIKSIENSKNPTLARFIFALGIRFV
GEQTGKHLADHFLTIDKFLEASEEELLQVPEIGAKVAKSIRDWTGNPKLVDEVKAMIELG
VKIAGPVRAQEGSLSGMSFLITGTLPVKRDDAKDLIERNGGKILGSVSSKLNYLVVGDDP
GSKVEKAQGLGVKIISWEELQAMI
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgatgcattttgccgtgactggacctcagagatgggtgcaaattattctatgtcc
aaaaaacgccatgaagagctcaagaagatcatttctgaacacgaccacaactaccatgtt
ctggataagcccaccattacagattacgaatacgatcagctcttcgcggagcttttggat
attgaaaagaaccccaagggactggatttgagtgactcgccctctcagcgcgtgggcggt
acggtcctggaaggatttacgaaagcccagcaccgtctgccgatgctttctttggccaat
agttattctcccgaggatatttttgagttcgatgaaagagttagaaaatttctaaatacc
gaagatcccgtggaatatctgtgtgagcttaaatttgacggcctatcgatggagctgatc
tatgaaaacggccagctggttcgcgccatcacccgaggtgacggcaccgtgggcgaagac
gtcactcacaacatcaaaaccatcaagagcattccattaaaactttctcataaaaatccg
cccccgcttctggaagtgcgcggggaagtcctgatgttcaaagaggactttgcaaggctg
aacgaaacccagcaggaaaacgggcagcagaccttcgccaacccccgtaatgccgccgcc
ggaaccgtgcgccagctggattcccgcatcgcggcctcccggccgctgcgtttcttcgga
tacgctctgggtgcggtggagggtgaaaccttcaacacacaaaagaacattcaggaatac
ttcaacgaccatggcattccgacggtgcttccgtacaaagaggacttgctggtggtggcc
aagggaccggaagaagtggtgaagtactatcaccacatcgaaaaagtccgtccgaaactt
ccatttgatattgacggcgtggtgatcaaggttaattccctgcgcctgcaagaggacctg
ggcctggtggccagaagccccagatgggccacggctgcgaagttcaaaccggagcaggcc
cagaccaccgtggaagacattgtggttcaggtgggtcgcaccggcgcgttgaccccggtg
gcgatcatgaagccggtgaaagtgggtggcgtcaccgttacgaacgccaccttgcacaac
caggatgaaatcacccgcaaagacatccgcatcggcgacaccgtgatcattcagcgtgct
ggtgacgtaatcccggaagtcgtggaggtcgtcaatcctgacaagcgcccggcggaccgt
ctgccgtactcgattccggaaagatgcccggcctgcgactctgtcgctgtgaaagctgaa
ggcgaagtggtcacccgctgcgtgaatccactgtgcatcgctgtcgtgaaagagtccttg
aaacatttcgtggccagacgtgcgatgaacatcgacaaggtcggagatcgcctgatcgaa
acactggtcgacaacaaactgctgacccgcttttccgatttctatcgtctgacgaaagag
cagattctgtctttggaacgccagggtgacaaatcggcggataacatcatcaagtccatt
gaaaacagcaagaacccgacacttgcgcgtttcatctttgcactgggaatacgcttcgtg
ggggaacaaaccggaaaacatctggcggatcacttcctgacgatagataaattcctggag
gcctccgaagaagaactgttgcaggtcccagagatcggcgccaaagttgccaaatccatc
cgcgactggactggaaatccgaagctggtcgacgaagtgaaagcaatgattgaactgggc
gtgaaaattgcggggcctgtgcgggcgcaagaaggctctctgtccggcatgagcttcctg
atcacaggcacacttccggtgaaacgggacgatgccaaggacttgatcgaaagaaatggc
gggaaaattctgggctcggtttcatccaagctgaattatctggtggtgggtgatgatccg
ggctctaaagtggaaaaagcccagggcttgggtgtgaagatcatctcttgggaagagctt
caggccatgatttag
DBGET
integrated database retrieval system
