Bacillaceae bacterium IKA-2: RJD24_21140
Help
Entry
RJD24_21140 CDS
T10990
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbam Bacillaceae bacterium IKA-2
Pathway
bbam03030
DNA replication
bbam03410
Base excision repair
bbam03420
Nucleotide excision repair
bbam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RJD24_21140 (ligA)
03410 Base excision repair
RJD24_21140 (ligA)
03420 Nucleotide excision repair
RJD24_21140 (ligA)
03430 Mismatch repair
RJD24_21140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbam03032
]
RJD24_21140 (ligA)
03400 DNA repair and recombination proteins [BR:
bbam03400
]
RJD24_21140 (ligA)
Enzymes [BR:
bbam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RJD24_21140 (ligA)
DNA replication proteins [BR:
bbam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RJD24_21140 (ligA)
DNA repair and recombination proteins [BR:
bbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RJD24_21140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RJD24_21140 (ligA)
MMR (mismatch excision repair)
DNA ligase
RJD24_21140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RJD24_21140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
RNA_pol_A_CTD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
WNF36868
LinkDB
All DBs
Position
complement(4346865..4348865)
Genome browser
AA seq
666 aa
AA seq
DB search
MERIERERELAELREKLKEYGYHYYVLDKPIVSDDEYDKLMKQLVQLEEKHPNLITEDSP
SVRIGGAPLPYFEKVKHEIPMLSLGNAFNEIDLRDFDRRISEGVGEPVSYACELKIDGLA
VSLKYEKGRFVLGSTRGDGEIGENITNNLKTVRSIPMRLKEAVDIEVRGEAFMPKQSFEK
LNKAKSDLGEEPFANPRNAAAGSLRQLDPKIAARRNLDIFLYSLTKINDKVLPSHTESLH
YMSFLGLKTNKEAIHCKNIDEVINYVDSWLDRRPHLAYEIDGIVIKVDSLEMQKKLGFTA
KSPRWAIAYKFPAEEVVTTLEDIELSIGRTGVLTPTAILKAVQVAGSTVKRASLHNEDLI
REKGIKLGDQVVIKKAGDIIPGVVNVLVDQRTGNERDFKMPTECPACDSELVRLEGEVAL
RCINPICPAQIREGLIHFVSRNAMNIDGLGERVITQLFEHGLIKDVADLYKLQKDELLNL
ERMGEKSVDNLLRAIEDSKDNSLEKLLFGLGIRFVGAKAAKTLAQFFETIDQLQEASDEE
LIAVNEIGVKMAGSIVRYFKKPEVSMLINELKAVGLNTSYNGQKQEIIGETAFLNKVIVL
TGKLEILAREEAKEKIEALGGKVTGSVSAKTDLLIAGDKAGSKLIKAESLGIEIWDEAKL
IEELNK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggagcggattgaaagggaaagagagttagctgaattaagagaaaagctgaaagagtat
ggctatcactattatgtattagataagccaattgtctcagatgacgagtacgataagcta
atgaaacagttagttcaacttgaagaaaagcatccaaacttaataaccgaagattctcca
tctgttcgaattggtggcgcacctttgccatattttgaaaaggtcaagcatgaaattcca
atgctaagccttggtaatgcttttaacgagattgaccttcgtgactttgatcgtcgtatc
tcagaaggagttggtgagcctgtttcgtatgcctgtgaattaaaaattgacggtttggct
gtttcattgaaatacgaaaaaggtcgctttgtacttggttcaacccgtggtgatggtgaa
ataggtgaaaatattactaataacttaaaaacagtacgttcaattccgatgcgcttaaaa
gaagcagtggacattgaagttcgtggcgaagcatttatgcctaagcaatcatttgaaaaa
ttaaataaagcaaaaagcgatctcggtgaagaaccgtttgcaaatcctcgtaatgcggca
gcgggttcattaagacaacttgatcccaaaattgcggcccgcagaaatttagatattttc
ttatattcgcttactaaaattaacgataaagtcttgccatctcatactgaatcgctccat
tatatgagttttttaggattgaaaacgaataaagaagctattcactgcaaaaatattgat
gaagtaattaactatgttgatagctggttagacaggcgtccgcatttagcctatgaaatt
gacgggatcgttattaaagttgactctcttgagatgcaaaaaaaattaggttttacagca
aaaagtccaaggtgggcaattgcatataagtttccagcagaagaggtagtgacaactctt
gaggatatcgagcttagtattggtaggaccggggtactgacaccaacagcgatactaaaa
gctgttcaagtagcaggatcaactgtaaaaagagcttcattacataatgaagatctgatc
cgtgaaaaagggattaaattaggtgatcaggtagttattaaaaaggctggagacattatt
cctggggtagttaatgttctcgttgatcagcgtactggaaacgaaagagactttaaaatg
ccaacggagtgtccagcctgtgatagtgaacttgttcgtttggagggagaagttgcgcta
cgttgcatcaaccctatatgcccagcgcagatccgtgaaggattaattcattttgtttca
agaaatgcaatgaatattgatggactaggagaacgagtgattacgcaactttttgagcac
ggtcttattaaagacgttgccgatctatataagcttcaaaaagacgaacttcttaactta
gaacgaatgggtgaaaaatcggttgataatttacttcgtgcaattgaagattctaaggat
aattccttggagaagttgttgtttggattgggaattcgttttgttggtgcaaaggcagct
aaaacgttagcgcaattttttgaaacaattgatcaattacaagaggcttctgatgaagaa
ctgatagcggttaatgaaataggtgtcaaaatggctggatcaatcgttcgctattttaag
aagccagaagtttcgatgttaataaatgaattaaaagcagttgggctgaacacttcttat
aacggtcaaaaacaggaaataattggtgaaactgcgtttttaaacaaagtgatcgtttta
actggtaaactagagattctagcaagggaagaggcaaaagaaaagatcgaagcccttggc
ggaaaagttactggtagtgtaagtgcaaaaacagatcttttaattgctggagataaagca
ggttcaaagttaataaaagctgaaagtttgggaatagagatctgggatgaagcaaaatta
attgaagaactaaataaataa
DBGET
integrated database retrieval system
