Burkholderiales bacterium YL45: A4V04_05920
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Entry
A4V04_05920 CDS
T04607
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbay
Burkholderiales bacterium YL45
Pathway
bbay03030
DNA replication
bbay03410
Base excision repair
bbay03420
Nucleotide excision repair
bbay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4V04_05920 (ligA)
03410 Base excision repair
A4V04_05920 (ligA)
03420 Nucleotide excision repair
A4V04_05920 (ligA)
03430 Mismatch repair
A4V04_05920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbay03032
]
A4V04_05920 (ligA)
03400 DNA repair and recombination proteins [BR:
bbay03400
]
A4V04_05920 (ligA)
Enzymes [BR:
bbay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4V04_05920 (ligA)
DNA replication proteins [BR:
bbay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4V04_05920 (ligA)
DNA repair and recombination proteins [BR:
bbay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4V04_05920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4V04_05920 (ligA)
MMR (mismatch excision repair)
DNA ligase
A4V04_05920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4V04_05920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
DNA_pol_lambd_f
Abi_alpha
EnY2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ANU65999
LinkDB
All DBs
Position
complement(1335902..1337962)
Genome browser
AA seq
686 aa
AA seq
DB search
MNMSAKKDSAKDLEIQKRMEQLADEINKHNQAYYVDNNPTISDELYDSLFQELVRLEQQY
PQFKTLFSPTERVGAAARTEAVKVKHKIPLLSIHTETDYTAQGAYDFDGRVRRELELTPQ
DPPVEYDCELKFDGLAVNIRYEKGILVQATTRGDGYEGEDVTANVRTIKTLPLKVENFPD
IFEVRGEVILHKSEFKRINEEQKAEGQKLFANPRNAAAGCLRQLDPSVTARRNLSFYAYG
YGEVSETVANKHSELLDYLKSKGFPVADTRVLAYGPEELQNFHVRVEKIRDDLPFDIDGV
VYKVNSFALQRSLGFVSREPRWACAHKYPPQEVQTVVQDITIQVGRTGKLTPVARLKPVF
VGGTTISNASLHNEEFLQNMGVKIGDTVVVRRAGDVIPEIVRVIKELRPDNARDFVMPEF
CPVCGSHAYKEEGEKDRKCTGGLFCQAQCVQSILHFVSRKAMGIDGIGEKLAEQLVEKGW
VKNISDIYRLTKEQFVSLERMGEKSADNLLASIEKSKSTTLEKFLYAISIPDVGESTART
LANHFRTLKACEDAGLEQLLEVDDVGMSTAEKILHFFAEPKNLQVIQELQDLGVHWEEKG
EVDASELVFSGMTFVLTGTLPTLSRDEASDMIRKAGGKVSGSVSKKTSYVLAGEAAGSKL
VKAQALSVPIISEEQFMVMLVQGKEE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgagcgccaaaaaagactcagcaaaggatttagaaattcagaagcggatggag
cagctggccgatgaaattaataagcataatcaggcttattacgtcgataacaatcccact
atttctgatgaactttatgattctctctttcaggaattagttaggcttgaacagcaatat
ccccaatttaagaccttattttctccgacggaaagagttggagctgccgcaagaaccgaa
gcagtcaaggtcaaacataagattcctctgctttccattcatacggaaactgattacacg
gcccagggggcttacgactttgacggccgcgtaagaagagagctcgaattgacgccgcaa
gatcctcctgttgaatacgactgcgagcttaaatttgacggtttggctgtcaatattcgt
tatgaaaaaggcattttggtccaagcaaccacccgcggggacggatatgagggagaagat
gtcacagccaacgttcgtaccatcaagacccttccgctgaaagttgaaaactttcccgat
atttttgaggtaagaggcgaagttattctccataagtcagaatttaagagaattaacgaa
gagcagaaagcagaagggcaaaagctttttgccaatccccgtaatgcggcggcaggctgc
ttaagacagcttgatccttcggttaccgccagaagaaacctatctttctatgcctatggc
tatggagaggtttctgaaacagtggccaataagcactcagaacttttggactacttgaaa
tccaaaggattcccggttgctgacacaagagttctggcatatgggccggaagaacttcaa
aacttccatgtaagagtagaaaaaatcagggatgatttgccttttgatattgacggagtg
gtttacaaagtcaacagctttgctttgcaaagatctttaggctttgtatctcgtgaacct
cgctgggcgtgtgcgcataagtatcctccccaagaggttcaaacagtggttcaagacata
accattcaagtcggcaggaccggcaagctcacgccggttgcccgtttaaaaccggtcttt
gtcggaggaacgactatcagcaacgcttctcttcacaatgaagagttcctccaaaacatg
ggcgtgaagattggagatacggtcgttgtaagacgcgccggagatgtcattccggaaatt
gtcagagtcattaaagagcttcgtccggataatgcccgggacttcgttatgccggagttt
tgtcccgtctgcggttctcacgcatacaaagaagagggggaaaaagataggaagtgtacg
ggaggtttattctgtcaagctcaatgtgtccagtccattcttcactttgtttctcgtaaa
gccatgggtatagacggaattggagagaaattggcggaacaattagttgagaagggctgg
gtaaaaaatatttcggatatttaccgtttgactaaggaacaatttgtctctttagaaaga
atgggagaaaagtcagcagataatcttctagcttccattgagaaatcgaagagtactacc
ttagaaaaatttctatatgccatcagtattcctgatgtcggagaatctactgctagaacc
ctagcaaatcactttagaacgttaaaagcttgtgaagacgcgggattggaacagctttta
gaggttgacgatgtcggaatgtccaccgctgagaaaattctccacttctttgcagagccc
aaaaacctgcaggttatccaagaactacaggatcttggcgttcattgggaagaaaaagga
gaagttgacgcctctgaattggtattttccggcatgacatttgtattgaccggtacattg
ccgactctttccagagatgaagccagcgatatgatccgtaaagccggaggaaaagtcagc
ggctccgtttctaaaaaaacaagttatgttcttgcgggggaagccgccggaagcaagctt
gtcaaagcgcaggctttatccgttccgattattagcgaagagcagtttatggttatgttg
gtccaaggaaaagaagaataa
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