Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0209
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Entry
UT28_C0001G0209 CDS
T03992
Name
(GenBank) ligase, NAD-dependent, DNA ligase (NAD+) protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03030
DNA replication
bbgw03410
Base excision repair
bbgw03420
Nucleotide excision repair
bbgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UT28_C0001G0209
03410 Base excision repair
UT28_C0001G0209
03420 Nucleotide excision repair
UT28_C0001G0209
03430 Mismatch repair
UT28_C0001G0209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbgw03032
]
UT28_C0001G0209
03400 DNA repair and recombination proteins [BR:
bbgw03400
]
UT28_C0001G0209
Enzymes [BR:
bbgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UT28_C0001G0209
DNA replication proteins [BR:
bbgw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UT28_C0001G0209
DNA repair and recombination proteins [BR:
bbgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UT28_C0001G0209
NER (nucleotide excision repair)
GGR (global genome repair) factors
UT28_C0001G0209
MMR (mismatch excision repair)
DNA ligase
UT28_C0001G0209
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UT28_C0001G0209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
5_3_exonuc
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
AKM82020
UniProt:
A0A0G4B365
LinkDB
All DBs
Position
complement(195721..197733)
Genome browser
AA seq
670 aa
AA seq
DB search
MQTKEDAKFRAEKLRKLIDDLRFRYHVLDDPTVTDEIYDSLTRELVGIESQFPDLKTADS
PTQRVGGEPLKEFQQVKHVSPMLSLTDVFDEQELKNWENRIFRLASEKEIKESGFYCEIK
MDGLAISLIYENGILIQAATRGNGQIGEDVTENVKTIQSIPLKLREDSTFYTANRIEVRG
EVYMPKKSFEKMNVDRKIKGEVMFANPRNAAAGSIRQLDSKITAKRKLAFMAYSLLGIET
EKLTFHEQEHLIAKDLGFPVNTHNQFCEDLKCIENYFERMEKERPKLPYQIDGIVININD
ENLFKKLGTIGKAPRGAVAYKWPAEEATTIVEDIQVSVGRTGVLTPIAFLRPVLVAGSTV
SRATLHNEDELRKKDIRIGDTVVIHKAGDVIPEVEKVLIELRTGKEKEFNFPKTCPECGG
KVVREAGKAAYRCENKDCFVVRQRSLQHFVSKAAFDMEGLGPKIINKLFEEKLISDPADL
FKLKKSDLEHLERFAEKSSENLINSIQSKKKIEFPRFIYALGIPNVGEETAFDLAKRYKS
IDELKNASLEDIQNIRDIGPIVAKSIYEYFQDPQNQDFIDRLLKAGVDIEIVTQSGKLAG
KTFVFTGGLENLSRDQAKEKVRLLGGDISESVGKDTSFIVAGKDPGSKLEKAKKLGVEIL
DEDHFLNLIK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaaaagaagacgctaaatttagagcagagaagcttcgaaaattaatcgatgat
cttcgtttccgttatcatgttttagatgacccgactgttaccgacgagatttatgattct
ttgacgcgcgaacttgttggtattgaatcccaattcccggatttaaaaaccgcggattca
ccgactcagcgcgtaggcggagagcctttaaaagaatttcaacaagtaaaacatgtgtca
ccaatgctttcgctgaccgatgtttttgacgaacaagaattaaaaaattgggaaaatcga
atttttcgtttagcaagtgaaaaagaaatcaaagaatctggtttttattgtgaaataaag
atggacggattggcaatttctttaatatacgagaatggaattttaatccaagctgctacg
cgtggtaatggtcaaattggtgaggatgtcacagaaaatgtaaaaacgattcaaagtatc
ccgcttaaattacgcgaggattcaacattttacacagctaatcgcattgaagttcgtggc
gaagtttatatgccgaaaaaatcttttgaaaaaatgaatgtcgatcgtaaaataaaaggc
gaagtaatgtttgccaacccgcgtaacgcagcggctggatcgatccgccagttggattct
aaaatcacagccaagcgcaaattggcatttatggcctattctttgctaggaatagaaacc
gaaaagctaacatttcacgaacaagaacatttaattgctaaagatttgggctttccagta
aatacgcataatcaattctgtgaagatttaaaatgcattgaaaattattttgaaagaatg
gaaaaggaacgccctaagcttccttaccaaattgacggaattgtcataaatattaatgat
gaaaatttatttaaaaaattgggcacgattggtaaagcgccgcgtggtgcagtcgcttac
aaatggccagctgaagaggctacgacgatcgtcgaagatattcaggttagcgttggccga
acgggtgttttgacaccaattgcttttttgagaccggtgttggtggcaggttctactgtt
tcacgggccaccttgcataatgaagacgaattaagaaaaaaagatatccgaatcggtgat
actgttgtaattcataaagctggagatgttattccggaagtagagaaagtattaatcgaa
cttcgaactggcaaggaaaaagaatttaattttccaaaaacatgtccagagtgcggcggc
aaggttgtccgtgaagcggggaaagcagcttatcgctgtgaaaacaaagattgttttgtt
gtccgccaaagatcattgcaacacttcgtttccaaagcggcatttgatatggaaggctta
ggaccgaaaattattaataaacttttcgaagaaaaattaatttctgatcctgccgattta
tttaaattaaagaaatctgacctcgaacatttggaacgttttgccgaaaaatcatcggag
aatttaatcaactcaattcagagtaaaaagaaaattgaatttccaagatttatttacgca
cttggcattccaaacgttggcgaggaaactgcatttgatttagctaaaagatataaaagt
atcgatgaattaaaaaacgcttctttggaagatattcaaaatattcgcgatattggccct
attgtggcaaaatcaatttatgaatattttcaggatccgcaaaatcaagattttatcgac
cgactgctaaaagccggagttgatattgaaattgttactcaaagcggaaagcttgctggc
aagacttttgtttttactggcggtttagaaaatttaagtcgtgaccaagcaaaagaaaaa
gtacgtcttttaggtggagatatttcagaatctgtcggcaaagatacttcttttattgtg
gcaggaaaagatcccggctctaaattagaaaaagctaaaaaacttggtgttgaaatatta
gacgaagatcattttttaaacttgataaaatag
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