Bordetella bronchiseptica 253: BN112_4611
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Entry
BN112_4611 CDS
T02344
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbh
Bordetella bronchiseptica 253
Pathway
bbh03030
DNA replication
bbh03410
Base excision repair
bbh03420
Nucleotide excision repair
bbh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN112_4611 (ligA)
03410 Base excision repair
BN112_4611 (ligA)
03420 Nucleotide excision repair
BN112_4611 (ligA)
03430 Mismatch repair
BN112_4611 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbh03032
]
BN112_4611 (ligA)
03400 DNA repair and recombination proteins [BR:
bbh03400
]
BN112_4611 (ligA)
Enzymes [BR:
bbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN112_4611 (ligA)
DNA replication proteins [BR:
bbh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN112_4611 (ligA)
DNA repair and recombination proteins [BR:
bbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN112_4611 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN112_4611 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN112_4611 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN112_4611 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CCJ56525
UniProt:
A0A0C6PEC2
LinkDB
All DBs
Position
4980044..4982134
Genome browser
AA seq
696 aa
AA seq
DB search
MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPD
SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY
FCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPRVLEVRG
EVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHG
LPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYE
RIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQV
GRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPV
LEKRPADAREFVMLTACPICGSAIERPEGEAIARCTGGLFCAAQRKQTLLHAAGRKALDI
EGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRL
LFALGIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNRE
IVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKK
TAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALLGL
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggcaggtcctacgccgcagcaagcgatcgcgcgcctgcgggccgagatcgag
cagcacaatatccgttattacgtccacgacgatcccagcgttccggacgccgagtacgac
gcgctcatgcgcgacctgcaagcgctggaggccgaacaccccgagctggtcacgcccgat
tcgccgacgcagcgcgtgggcgccgcgccgctggccgaattcggcagcgtgcgccacgcc
gtgcccatgctgtcgctgggcaatgctttcgacgaagaggacgtgcgcgccttcgacaag
cgcgtggccgataccctgcgcggcgcgggcctgctgggcctggatcagcaggttgaatac
ttctgtgaactcaagctggacggcctggcgatcagcctgcgctacgaggagggcaggctg
gcccaggcggccacgcgcggcgacgggcagaccggcgaggacgtcacggccaacatccgc
accatcaaaggcgtgccgttgcgcctgcacggcgcgccgcgggtactcgaggtgcgcggc
gaagtcctgatgaaccgtgccgagttcgaacgcctgaaccgtacgcaggcagcgcgcggc
gagaaagtgttcgtcaacccacgcaatgccgcggccggcagcctgcgccagctcgatccg
cgcatcacggcgcagcggccgttgcgtttcttcgcgtatagctggggcgaagtccatggc
ctgcccgaaggcatgccgacgcgctttgacgagcccgcgccgggcgtgcgcgtggcgtcc
acgctgccgcgcgacacgcatggcggcatgctggactggctggccgaactgggcctgccg
gtcaatctgcggcacaaccaccgagagcgcggcgccgacgggctgctggccttttacgag
cgtatcggcaagctgcgcgccgatctgccctacgacatcgacggcgtggtctacaaggtc
gacgccttgccgtcgcagcgcgtgctgggcttcgtcgcgcgcgcgccgcgctttgcgctg
gcgcacaagtttccggccgaggaggccgtcacgcaactgctcggtatcgaggtccaggtg
ggccgcacgggcgcgatcacgcccgtggcgcgcctggcgccggtgttcgtcggcggggtg
acggtcaccaacgccaccctgcacaacgaagacgagatccgccgcaaggatgtgcgcatc
ggcgataccgtgatcgtgcggcgtgccggcgatgtcatccccgaggtggtcgggccggta
ctggaaaagcggccggccgacgcgcgcgagttcgtcatgctgaccgcctgccccatctgc
ggctcggcgatcgagcgccccgagggcgaggccatcgcccgctgcacgggcgggctgttc
tgcgccgcccagcgcaagcagaccctgctgcatgccgccggccgcaaggcgctggatatc
gaaggcctgggcgaaaagctgatcgaccaactggtcgacgccgatcgcgtcaagtcgctg
gccgatatctacagcctgactgcgttcgaactggcggcgctcgaacgcatgggcaagaaa
tcggcggaaaacctggtggcggccatcgaccaggcgcgccgtccggctctgggccgcttg
ctgttcgcgctgggcatacgccatgtgggcgagacgacggcccgcgacgtggcacgccat
ttcggcagcatggaacgcatcatggacgccagcgaagaagcgctgctggccgtgcccgac
gtgggcggcgtggtggccggctcgatccggcgcttcttcgccgagccgcacaaccgcgag
atcgtcgagcagctcacgcagcagggcgtgcacccgcaagccgaggccgagcccgagggc
accagcctggccggcaagaccttcgtcctgaccggcaccatgccgaactggacccgcgat
gaggcgactcgccgtatcctggccgccggcgggaaggtcagcggttcggtctccaagaag
acggcctacctggtgacgggcgaggatgccggcagcaagctgaccaaggcccaggaactc
ggcgttccggtgctggacgaggacggcctgaaggcgctgctgggcctatag
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