Bifidobacterium bifidum S17: BBIF_0706
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Entry
BBIF_0706 CDS
T01328
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbi
Bifidobacterium bifidum S17
Pathway
bbi03030
DNA replication
bbi03410
Base excision repair
bbi03420
Nucleotide excision repair
bbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBIF_0706 (ligA)
03410 Base excision repair
BBIF_0706 (ligA)
03420 Nucleotide excision repair
BBIF_0706 (ligA)
03430 Mismatch repair
BBIF_0706 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbi03032
]
BBIF_0706 (ligA)
03400 DNA repair and recombination proteins [BR:
bbi03400
]
BBIF_0706 (ligA)
Enzymes [BR:
bbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBIF_0706 (ligA)
DNA replication proteins [BR:
bbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBIF_0706 (ligA)
DNA repair and recombination proteins [BR:
bbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBIF_0706 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBIF_0706 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBIF_0706 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBIF_0706 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ADO52911
LinkDB
All DBs
Position
865659..868361
Genome browser
AA seq
900 aa
AA seq
DB search
MARAAVSQSSGDQLAWDFDDPDAGEAPAPVENEGAARFAPGSSQWVAALQSTDADAARLD
RLDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL
DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM
TCEVKIDGLALNLIYRNGVLEQGLTRGDGLTGEDITLNVRTIGSIPANLGGPAADIPEFV
EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG
TLRWGSGRPVGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRGDI
EHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDITVQVGRTGRVTPV
AVLKPVYVAGSTVSRTTLHNPFEVKRKGVLIGDTVVVRKAGDVIPELVGPVVERRKGRED
DLREFVMPDRCPSCGSKLAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGD
QSAIALTNPEENRPDSPDTFAPNITEILVKPGEEPEPYEPVEGLRLPERQKPVLSSEAGL
FTLDAAALRDVRVWREAAIIEIHETVTADGKTKRTRKRIGGSGLWHQVPAFWTAPTPAKK
LSARRQAAAGAPADAAAEPYPGYDVPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMF
DEMDKARHADLWRVLVALSIRRLGPPTARLIASAFGSLDAIEQAGVDELSAIDGIGPEIA
ESVVNWFAAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRD
SAKEAIIERGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLETGAVQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgcagcggtttcgcaatcatccggcgaccagttggcttgggatttcgacgat
ccggacgctggggaggctccggcgccggtcgagaacgaaggcgccgcccggttcgcgccc
ggctcatcccagtgggtcgccgcgctgcagtccacggacgctgatgcggcccggctggat
cggctggatgtgtcctcgctgtcgaacgaggttgcagcccgcctgtgggcgcgcgtcgcg
gcgtgggtcgaggccgaccagatcgcctattacatcgatgacgcgccggtctcgtccgac
gcggcctacgatgcacgcttgcgttgcctgcaacggctggaggcggagttcccgtcgttg
gattcaccgcagtctcccacgcaccgggtcggcggcacgttctccaatgatttcgcttcg
gtgcggcatccgtcgcgcatgatgagccttgacgacgtgttctcgatcgaggagctgcgc
gattggtacgattcggtgctgcgcgatttggactggcctgagggcaagccgttgccgatg
acctgcgaggtgaagatagacggcctggcattgaatctgatataccgcaacggcgtgctg
gaacaggggctgacgcgtggcgatggcctcaccggtgaggacatcacgctcaatgtgcgc
acgatcggctctattcccgccaatctcggcgggccggccgcggatatccccgagttcgtg
gagatccgcggcgaggtgttcatgcgttgggacgatttcaaggcgctcaacggtgaacag
gaggatgccgggcgccctccgttcgccaacccgcgcaatgcggcggccggatcgctcagg
cagaaggatccgcgcatcaccgccacaaggcggctgagcttttacgcgcatggcatcggt
acgctgcgctggggctcggggcggcccgtcggctcgcatgacgtcgtcgccgaccagtcc
gaggcgtacacgctgtactccaagtggggagtgccggtgtcgccgcacaaccgtgaggtc
acgtcgttcgcgcagatcctcgacatgatcgactattacggcgagcaccgcggcgacatc
gagcacgcgctcgacggcatcgtcgtcaaggtcgacgatctcggcctgcagaggtcgctg
ggcgcgacctcgcgggcgccgcgttgggccatcgcctacaagtacccgcccgaggaggtc
aacaccgaactgctggacatcaccgtgcaggtcgggcgtaccgggcgcgtcacgcccgtc
gccgtgctcaagcccgtgtatgtagcggggtccacggtgtctcgcacgacattgcacaat
ccgttcgaggtcaagcgcaagggggtgctgatcggcgacacggtggtggtgcgcaaggcc
ggcgacgtgattcccgagctggtcgggccggtcgtggaacgccgcaaggggcgtgaagac
gacctgcgcgaattcgtcatgccggatcgttgcccgtcctgcggatcgaagctcgcaccg
gccaaggagggagacaaggacattcgctgcccgaacgtggaatcctgccccgcccagctg
accgagcgcatcatcaacctggcttcgcgcaaggcgttcgacatcgagcatctgggcgac
cagtcggccatcgcgctgaccaacccggaggagaaccggccggattcgccggatacgttc
gctccgaacatcaccgagattctcgtcaagcccggcgaggagccggagccgtacgagccc
gtggagggactgcggctgccggaacggcagaagccagtgctgtcgagcgaagcggggttg
ttcacactggacgccgcggcgctcagggatgtgcgcgtgtggcgcgaggccgcgatcatc
gagatccatgagacggtcacggccgacggcaagaccaagcgcactcgcaaacgcatcggt
ggctcgggcctatggcatcaggtcccggcgttctggaccgcgcccacgccggcgaagaag
ctttccgcgcgacggcaggctgcggccggcgcgccggccgacgctgcggctgagccgtat
ccgggatatgacgtgccggccgatgcggtggtcgtgcgcgtcgatcggaagaccacgcgc
aacggcacggtcgacgtccccgtgtacgtccgccccggcgagaacacgcgcaagatgttc
gacgagatggacaaggcccggcacgccgacctgtggcgggtgctggtcgccttgtcgata
cgtcgtctcggcccgcccacggcccgtctgatcgcctccgccttcggctcgttggacgcc
atcgagcaggcgggcgtggacgagctgtcggccattgacggcatcggcccggaaatcgcc
gaatcggtggtcaattggttcgccgccgcccgtgagccgagggattggcggggcgagacg
ctgcgcgcctggcaggcggccggtgtcggggtcgccgccgccgagaccagcacgctgccg
cagacgcttgccggaaagaccgtcgtcgtgactggttctctggagggattctcgcgtgat
tccgccaaggaggccatcatcgagcgcggcggcaaggctgccggctcggtcagcaagaaa
accgattgggtcgtcgtcggcgaaaacgccggctccaaggccgccaaggccgaagaactc
ggcatccccatgcttgacgaagcccaattccgcaccctcttggaaaccggcgccgtgcaa
tag
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