Bartonella bacilliformis: BARBAKC583_0937
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Entry
BARBAKC583_0937 CDS
T00456
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbk
Bartonella bacilliformis
Pathway
bbk03030
DNA replication
bbk03410
Base excision repair
bbk03420
Nucleotide excision repair
bbk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BARBAKC583_0937 (ligA)
03410 Base excision repair
BARBAKC583_0937 (ligA)
03420 Nucleotide excision repair
BARBAKC583_0937 (ligA)
03430 Mismatch repair
BARBAKC583_0937 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbk03032
]
BARBAKC583_0937 (ligA)
03400 DNA repair and recombination proteins [BR:
bbk03400
]
BARBAKC583_0937 (ligA)
Enzymes [BR:
bbk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BARBAKC583_0937 (ligA)
DNA replication proteins [BR:
bbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BARBAKC583_0937 (ligA)
DNA repair and recombination proteins [BR:
bbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BARBAKC583_0937 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BARBAKC583_0937 (ligA)
MMR (mismatch excision repair)
DNA ligase
BARBAKC583_0937 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BARBAKC583_0937 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ABM45313
UniProt:
A1UTB5
LinkDB
All DBs
Position
complement(963536..965689)
Genome browser
AA seq
717 aa
AA seq
DB search
MDKDAKNLTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPE
LVRADSPSYKVGAPISERFEKSVHAQAMLSLDNAFSSEDVHEFVERVRRFLRLPVTKTLE
MTAEPKIDGLSLSLRYEKGKLVCAATRGDGYVGENVTVNARTLSDIPQVLQGDFPDILEV
RGEVYMRHSDFQDLNVDQQEKGKLVFANPRNAAAGSLRQLDTRMTARRKLKFFAYGWGEV
SEMPAKSQMEMVKKLKEYGFVINPLTKVFKAVEDLISYYHFIEEGRQHLDYDIDGVVYKV
NDLLLQTRLGNVSRSPRWAIAHKFPAEKAMALLENIDIQIGRTGALTPVARLAPITVGGV
VVTNASLHNEDYIKGLGSKSESIREGRDIRIGDTVIVQRAGDVIPQIIDVIIEKRPKGAS
PFVFPSLCPACGSHAVREVGEAVRRCTGGLICPAQAIERIRHFVSRNAFDIEGLGEKQVE
FFFHAQDETLRIHSPADIFTLQKRQEKSLTRLENMEGFGTLSVRKLYDAINARRKIPLSR
FLFALGIRHVGEVNARRLARAYQNYNAFETVAMTALMPCNKEDKGNEEWLELTSIEGIGV
RVGKAIIDFYQETHNRDVLSSLLQEVTPLPEEAAVADYSPVAGKTIVFTGTLVHMSRDEV
KALAERLGAKASSSISKKTDLLVAGIGAGSKLTKAKELGIEIMDEESWLQLINEHHI
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggataaggatgcgaaaaatttaactgctctcgaagcagagcgtgagttagagtggcta
gcaaaagaaattgcgcgtcacgatgtgctttataacaatcatgaccagcctgaaatttct
gatgcacgatatgatgctcttcgtcgtcgtaatatagaaattgagactctatttcctgaa
ttggttcgagcagattctccttcatataaagttggtgctccaatttctgaaagatttgaa
aaatctgttcatgcacaggcgatgttatcccttgataatgcgtttagttctgaagatgtt
catgaatttgttgagcgtgttcgtcgttttttacgacttccagtgacaaaaacattggag
atgacagctgaaccgaaaattgatggtctgtctttgtctttacgttatgaaaaaggaaag
cttgtgtgtgcagcaacccgtggtgatgggtatgtaggcgaaaatgttactgtgaatgca
cgaacactttctgatattcctcaggttttacaaggtgattttcctgatattcttgaggtt
cgtggtgaagtgtatatgagacacagtgatttccaagaccttaatgtggatcaacaagaa
aaaggaaagttggtttttgctaatcctagaaacgctgctgcaggttctttgcgtcagctc
gatacgcgaatgactgctcgtagaaaacttaaattttttgcttatggttggggtgaagtg
agtgaaatgccagctaaaagccaaatggagatggtaaagaagctaaaagaatatggcttt
gttatcaacccattaacaaaagtttttaaggcagtagaagaccttatttcatattatcat
tttatcgaagaaggtcgtcaacatttagactatgatattgatggggttgtttacaaggtt
aatgatttgctgttgcaaacgcgtttagggaatgtgtctcgttcaccacggtgggcgatt
gcacataaatttccagcagaaaaagcaatggcgcttctagaaaatattgacatccaaata
ggtcgaacaggagcattaacgcccgttgcgcgtctcgcacctattacggtaggtggagtt
gtggttactaatgcaagcttgcataatgaagattatatcaaggggcttgggagtaaaagt
gaatctattcgcgaagggcgtgatatccgtataggtgatacagtcattgtacagcgtgcg
ggtgatgtaattccccagattattgatgttataattgaaaagcgtccaaaaggtgcgtct
ccttttgtttttccctctctttgtcctgcttgtgggagtcacgctgttcgtgaagtgggt
gaagcagtgcgccggtgtacaggtgggttgatttgtccagcgcaagcgattgaacgtatt
cgtcattttgtttcgcgcaatgcttttgatattgaggggcttggtgaaaaacaggtagaa
tttttctttcatgctcaagatgagacactacgtattcactcaccagctgatatttttact
ttacaaaaacgccaagaaaaatctctaacacggttagaaaatatggaggggtttggaact
ctttctgttcgcaaactttatgatgctattaatgctcgccgaaaaattcctttaagccgc
tttttatttgcattaggaattcgtcatgttggagaggtcaatgcacggcgtcttgcacgg
gcctatcaaaattataatgcttttgagactgtagcgatgacagcactaatgccatgcaat
aaggaagataaaggcaatgaggagtggttagaactgacgagtatcgaagggattggagtt
cgtgttggtaaagcgattattgatttttatcaggaaactcataaccgtgatgttttatcg
agtttgcttcaagaagtaacacctcttcctgaggaggccgcagtagcagattattctcct
gttgcaggaaagacgatcgtttttacaggaactttggtgcatatgtcacgtgatgaagta
aaagcgttggcagaacgattaggagccaaagcatctagttccatttctaaaaaaactgat
cttctggttgcagggataggagccggatcgaaattaacgaaagcaaaagagttaggcatt
gagattatggatgaagaaagttggcttcaattaattaatgagcatcatatttaa
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