Bifidobacterium bifidum PRL2010: BBPR_0685
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Entry
BBPR_0685 CDS
T01340
Symbol
ligA
Name
(GenBank) LigA NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbp
Bifidobacterium bifidum PRL2010
Pathway
bbp03030
DNA replication
bbp03410
Base excision repair
bbp03420
Nucleotide excision repair
bbp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBPR_0685 (ligA)
03410 Base excision repair
BBPR_0685 (ligA)
03420 Nucleotide excision repair
BBPR_0685 (ligA)
03430 Mismatch repair
BBPR_0685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbp03032
]
BBPR_0685 (ligA)
03400 DNA repair and recombination proteins [BR:
bbp03400
]
BBPR_0685 (ligA)
Enzymes [BR:
bbp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBPR_0685 (ligA)
DNA replication proteins [BR:
bbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBPR_0685 (ligA)
DNA repair and recombination proteins [BR:
bbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBPR_0685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBPR_0685 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBPR_0685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBPR_0685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ADP35774
UniProt:
A0A0H3EBW7
LinkDB
All DBs
Position
851719..854409
Genome browser
AA seq
896 aa
AA seq
DB search
MARAAVSQSSGDQLAWDFDDPDAGEAPAPVENEGAARFAPGSSQWVAALQSTDADAARLD
RLDVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQRLEAEFPSL
DSPQSPTHRVGGTFSNDFASVRHPSRMMSLDDVFSIEELRDWYDSVLRDLDWPEGKPLPM
TCEVKIDGLALNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPAADIPEFV
EIRGEVFMRWDDFKALNGEQEDAGRPPFANPRNAAAGSLRQKDPRITATRRLSFYAHGIG
TLRWGSGRPAGSHDVVADQSEAYTLYSKWGVPVSPHNREVTSFAQILDMIDYYGEHRGDI
EHALDGIVVKVDDLGLQRSLGATSRAPRWAIAYKYPPEEVNTELLDVTVQVGRTGRVTPV
AVLKPVYVAGSTVSRTTLHNPFEVKRKGVLIGDTVVVRKAGDVIPELVGPVVERRKGRED
DLREFVMPDRCPSCGSKLAPAKEGDKDIRCPNVESCPAQLTERIINLASRKAFDIEHLGD
QSAIALTNPEENRPDSPDTFAPNITEILVKPGEEPEPYEPVEGLRLPERQKPVLSSEAGL
FTLDAAALRDVRVWREAAIIEIHETVTADGKTKRTRKRIGGSGLWHQVPAFWTAPTPAKK
LSARRQAAADAAAEPYPGYDVPADAVVVRVDRKTTRNGTVDVPVYVRPGENTRKMFDEMD
KARHADLWRVLVALSIRRLGPPTARLIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVV
NWFAAAREPRDWRGETLRAWQAAGVGVAAAETSTLPQTLAGKTVVVTGSLEGFSRDSAKE
AIIERGGKAAGSVSKKTDWVVVGENAGSKAAKAEELGIPMLDEAQFRTLLETGAVQ
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgcagcggtttcgcaatcatccggcgaccagttggcttgggatttcgacgat
ccggacgctggggaggctccggcgccggtcgagaacgaaggcgccgcccggttcgcgccc
ggctcatcccagtgggtcgccgcgctgcagtccacggacgctgatgcggcccggctggat
cggctggatgtgtcctcgctgtcgaacgaggttgcagcccgcctgtgggcgcgcgtcgcg
gcgtgggtcgaggccgaccagatcgcctattacatcgatgacgcgccggtctcgtccgac
gcggcctacgatgcgcgcttgcgttgcctgcaacggctggaggcggagttcccgtcgttg
gattcaccgcaatctcccacgcaccgggtcggcggcacgttctccaatgatttcgcttcg
gtgcggcatccgtcgcgcatgatgagccttgacgacgtgttctcgatcgaggagctgcgc
gattggtacgattcggtgctgcgcgatttggactggcctgagggcaagccgttgccgatg
acctgcgaggtgaagatagacggtctggcattgaatctgatataccgcaacggcgtgctg
gaacaggggctgacgcgtggcgacggcgtcaccggtgaggacatcacgctcaatgtgcgc
acgatcggctccattcccgccaatctcggcgggccggccgcggatatccccgagttcgtg
gagatccgcggcgaggtgttcatgcgttgggacgatttcaaggcgctcaacggtgaacag
gaggatgccgggcgccctccgttcgccaacccgcgcaatgcggcggccggatcgctcagg
cagaaggatccgcgcatcaccgccacaaggcggctgagcttttacgcgcatggcatcggt
acgctgcgctggggctcggggcggcccgccggctcgcatgacgtcgtcgccgaccagtcc
gaggcgtacacgctgtactccaagtggggagtgccggtgtcgccgcacaaccgtgaggtc
acgtcgttcgcgcagatcctcgacatgatcgactattacggcgagcaccgcggcgacatt
gagcacgcgctcgacggcatcgtcgtcaaggtcgacgatctcggcctgcagaggtcgctg
ggcgcgacctcgcgggcgccgcgttgggccatcgcctacaagtacccgcccgaggaggtc
aataccgaactgctggacgtcaccgtgcaggtcgggcgtaccgggcgcgtcacgcccgtc
gccgtgctcaagcccgtgtatgtagcggggtccacggtgtctcgcacgacattgcacaat
ccgttcgaggtcaagcgcaagggggtgctgatcggcgatacggtggtggtgcgcaaggcc
ggcgacgtgattcccgaactggtcgggccggtcgtggaacgccgcaaggggcgtgaagac
gacctgcgcgaattcgtcatgccggatcgttgcccgtcctgcggatcgaagctcgcaccg
gccaaggagggagacaaggacattcgctgcccgaacgtggaatcctgccccgcccagctg
accgagcgcatcatcaacctggcttcgcgcaaggcgttcgacatcgagcatctgggcgac
cagtcggccatcgcgctgaccaacccggaggagaaccggccggattcgccggatacgttc
gctccgaacatcaccgagattctcgtcaagcccggcgaggagccggagccgtacgagccc
gtggagggactgcggctgccggaacggcagaagccagtgctgtcgagtgaagcggggctg
ttcacactggacgccgcggcgctcagggatgtgcgcgtgtggcgcgaggccgcgatcatc
gagatccatgagacggtcacggccgacggcaagaccaagcgcactcgcaaacgcatcggt
ggctcgggcctatggcatcaggtcccggcgttctggaccgcgcccacgccggcgaagaag
ctttccgcgcgacggcaggctgcggccgacgctgcggctgagccgtatccgggatatgac
gtgccggccgatgcggtggtcgtgcgcgtcgatcggaagaccacgcgcaacggcacggtc
gacgtccccgtgtacgtccgccctggcgagaacacgcgcaagatgttcgacgagatggac
aaggcccggcacgccgacctgtggcgggtgctggtcgccttgtcgatacgtcgtctcggc
ccgcccacggcccgtctgatcgcctccgccttcggctcgctggaggccatcgagcaggcg
ggcgtggacgagctgtcggccattgacggcatcggcccggaaatcgccgaatcggtggtc
aattggttcgccgccgcccgtgagccgagggattggcggggcgagacgctgcgcgcctgg
caggctgccggcgtcggggtcgccgccgccgagaccagcacgctgccgcagacgcttgcc
ggaaagaccgtcgtcgtgactggttctctggagggattctcgcgtgattccgccaaggag
gccatcatcgagcgcggcggcaaggctgccggctcggtcagcaagaaaaccgattgggtc
gtcgtcggcgaaaacgccggctccaaggccgccaaggccgaagaactcggcatccccatg
cttgacgaagcccaattccgtaccctcttggaaaccggcgccgtgcaatag
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