Bordetella bronchiseptica RB50: BB3804
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Entry
BB3804 CDS
T00141
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbr
Bordetella bronchiseptica RB50
Pathway
bbr03030
DNA replication
bbr03410
Base excision repair
bbr03420
Nucleotide excision repair
bbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB3804 (ligA)
03410 Base excision repair
BB3804 (ligA)
03420 Nucleotide excision repair
BB3804 (ligA)
03430 Mismatch repair
BB3804 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbr03032
]
BB3804 (ligA)
03400 DNA repair and recombination proteins [BR:
bbr03400
]
BB3804 (ligA)
Enzymes [BR:
bbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BB3804 (ligA)
DNA replication proteins [BR:
bbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB3804 (ligA)
DNA repair and recombination proteins [BR:
bbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BB3804 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB3804 (ligA)
MMR (mismatch excision repair)
DNA ligase
BB3804 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BB3804 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAE35778
UniProt:
Q7WCJ7
LinkDB
All DBs
Position
complement(4025309..4027399)
Genome browser
AA seq
696 aa
AA seq
DB search
MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPD
SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY
FCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPRVLEVRG
EVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHG
LPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYE
RIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQV
GRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPV
LEKRPADAREFVMLTACPICGSAIERPEGEAIARCTGGLFCAAQRKQTLLHAAGRKALDI
EGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRL
LFALGIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNRE
IVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKK
TAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALLGL
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggcaggtcctacgccgcagcaagcgatcgcgcgcctgcgggccgagatcgag
cagcacaatatccgttattacgtccacgacgatcccagcgttccggacgccgagtacgac
gcgctcatgcgcgacctgcaagcgctggaggccgaacaccccgagctggtcacgcccgat
tcgccgacgcagcgcgtgggcgccgcgccgctggccgaattcggcagcgtgcgccacgcc
gtgcccatgctgtcgctgggcaatgctttcgacgaagaggacgtgcgcgccttcgacaag
cgcgtggccgataccctgcgcggcgcgggcctgctgggcctggatcagcaggttgaatac
ttctgtgagctcaagctggacggcctggcgatcagcctgcgctacgaggagggcaggctg
gcccaggcggccacgcgcggcgacgggcagaccggcgaggacgtcacggccaacatccgc
accatcaaaggcgtgccgttgcgcctgcacggcgcgccgcgggtactcgaggtgcgcggc
gaagtcctgatgaaccgtgccgagttcgaacgcctgaaccgtacgcaggcagcgcgcggc
gagaaagtgttcgtcaacccgcgcaatgccgcggccggcagcctgcgccagctcgatccg
cgcatcacggcgcagcggccgttgcgtttcttcgcgtatagctggggcgaagtccatggc
ctgcccgaaggcatgccgacgcgctttgacgagcccgcgccgggcgtgcgcgtggcgtcc
acgctgccgcgcgacacgcatggcggcatgctggactggctggccgaactgggcctgccg
gtcaatctgcggcacaaccaccgagagcgcggcgccgacgggctgctggccttttacgag
cgtatcggcaagctgcgcgccgatctgccctacgacatcgacggcgtggtctacaaggtc
gacgccttgccgtcgcagcgcgtgctgggcttcgtcgcgcgcgcgccgcgctttgcgctg
gcgcacaagtttccggccgaggaggccgtcacgcaactgctcggtatcgaggtccaggtg
ggccgcacgggcgcgatcacgcccgtggcgcgcctggcgccggtgttcgtcggcggggtg
acggtcaccaacgccaccctgcacaacgaagacgagatccgccgcaaggatgtgcgcatc
ggcgataccgtgatcgtgcggcgtgccggcgatgtcatccccgaggtggtcgggccggta
ctggaaaagcggccggccgacgcgcgcgagttcgtcatgctgaccgcctgccccatctgc
ggctcggcgatcgagcgccccgagggcgaggccatcgcccgctgcacgggcgggctgttc
tgcgccgcccagcgcaagcagaccctgctgcatgccgccggccgcaaggcgctggatatc
gaaggcctgggcgaaaagctgatcgaccaactggtcgacgccgatcgcgtcaagtcgctg
gccgatatctacagcctgactgcgttcgaactggcggcgctcgaacgcatgggcaagaaa
tcggcggaaaacctggtggcggccatcgaccaggcgcgccgtccggctctgggccgcttg
ctgttcgcgctgggcatacgccatgtgggcgagacgacggcccgcgacgtggcacgccat
ttcggcagcatggaacgcatcatggacgccagcgaagaagcgctgctggccgtgcccgac
gtgggcggcgtggtggccggctcgatccggcgcttcttcgccgagccgcacaaccgcgag
atcgtcgagcagctcacgcagcagggcgtgcacccgcaagccgaggccgagcccgagggc
accagcctggccggcaagaccttcgtcctgaccggcaccatgccgaactggacccgcgat
gaggcgactcgccgtatcctggccgccggcgggaaggtcagcggttcggtctccaagaag
acggcctacctggtgacgggcgaggatgccggcagcaagctgaccaaggcccaggaactc
ggcgttccggtgctggacgaggacggcctgaaggcgctgctgggcctatag
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integrated database retrieval system
