Bradyrhizobium brasilense: QA636_13345
Help
Entry
QA636_13345 CDS
T09107
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbra
Bradyrhizobium brasilense
Pathway
bbra03030
DNA replication
bbra03410
Base excision repair
bbra03420
Nucleotide excision repair
bbra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QA636_13345 (ligA)
03410 Base excision repair
QA636_13345 (ligA)
03420 Nucleotide excision repair
QA636_13345 (ligA)
03430 Mismatch repair
QA636_13345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbra03032
]
QA636_13345 (ligA)
03400 DNA repair and recombination proteins [BR:
bbra03400
]
QA636_13345 (ligA)
Enzymes [BR:
bbra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QA636_13345 (ligA)
DNA replication proteins [BR:
bbra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QA636_13345 (ligA)
DNA repair and recombination proteins [BR:
bbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QA636_13345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QA636_13345 (ligA)
MMR (mismatch excision repair)
DNA ligase
QA636_13345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QA636_13345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WFU66425
LinkDB
All DBs
Position
2882461..2884611
Genome browser
AA seq
716 aa
AA seq
DB search
MAKAAKKKELSDVDKLTKAQAKVELMRLALELEGHDKRYYQDDAPSVSDAEYDALRQRHN
AIEKRFPEFVTAESPSQKVGAAPSGRFRKVRHSLPMLSLDNAFAEADVVDFVGRITRFLK
LPDDKIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLEDVPQKLKGR
NVPDICEVRGEVYMTKKAFLALNERQKAAGDTIFANPRNSAAGSLRQKDPTITASRPLGF
FAYAWGEMSALPEDTQTGMIHWFERCGFKTNPLTKLCHSVEELIAFHRKIEEQRAELDYD
IDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLRDIEIQVGRTGSFTPVGKL
EPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVVI
DKRPKSAKEFHFPKKCPCPLHTDVVREETAAGEEGSRARCTGEFACPFQKVEHLILFVSR
RAFDIDGLGVKQLQYFFDEGWVKEPADIFTLQKRNAKLKLEDIEGYGETSVRNLFAAIDS
RRRIGLERFIYALGMRHVGETTALALARGYGSWDAFHDACLKVAKGDEEAMAEMDALDQI
GDTVIKSIADYFGESHNRGIVERLTGELDEIIDAEKPKSNSAVAGKTVVFTGSLEMMTRD
EAKATAERLGAKAAGSVSKKTDYVVAGPGAGSKLAEAQKHGVQVLTEDEWLKLIGE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagcagcaaaaaagaaagaactctccgacgtcgacaagctcaccaaggcccag
gccaaggtcgagttgatgcgccttgcgctcgagctcgaaggtcacgacaagcgctactat
caggacgacgcgccgagcgtcagcgacgccgaatacgacgcgctgcggcagcgccacaat
gcgatcgagaagcgcttccctgaattcgtcaccgcggaatcgccgtcgcagaaggtcggc
gccgcgccgtcggggcgcttcaggaaggttcgtcattcgctgccgatgctgtcgctcgac
aacgcgttcgcggaagccgacgtggtcgatttcgtcgggcgcatcacgcgcttcctcaag
ctgccggatgacaagatcgatttctcggccgagccgaagatcgacgggctctcgatgtcg
ctgcgctacgagggcggcgaactcgtcaccgcggcaacccgcggcgacggcgccgagggc
gaggacgtcaccgccaacatccgcacgctcgaggacgtgccgcagaagctgaagggccgc
aacgtgcccgacatttgcgaggtgcgcggcgaggtctatatgaccaagaaggcgttcctc
gcgctcaacgagcggcagaaggcggccggcgacaccatcttcgccaatccgcgcaattcg
gcggccggctcgctgcggcagaaggatcccacaatcactgcctcgcggccgctcggcttc
ttcgcctatgcctggggcgagatgagcgcgctgccggaggatacccagaccggcatgatc
cactggttcgagcggtgcggcttcaagaccaatccgctgaccaagctgtgccactcggtc
gaggagctgatcgccttccatcgcaagatcgaggagcagcgcgccgagctcgactacgac
atcgacggcgtcgtctacaaggtcgatcgcatcgactggcaggagcggctcggcttcgtg
tcgcgcacgccgcgctgggcgatcgcgcacaaattcccggccgagcgcgccatgacggtt
ttgcgcgacatcgagatccaggtcgggcgcaccggctcattcacgccggtcggcaagctc
gagccggtcggtgtcggcggcgtgatcgtgcagaacgtcacgctgcacaatgaggactac
atcaagggcatcggcaacaagggcgaggtgctgcgcgagggacgcgacatcaggatcggc
gacaccgtggtgatccagcgcgccggcgacgtgatcccgcaggtcgtcgacgtcgtgatc
gacaagcggccgaagagcgcgaaggaattccacttcccaaagaagtgcccgtgcccgctg
cacaccgacgtggtgcgcgaggagactgcggccggcgaggagggctcgcgcgcccgctgc
accggcgagttcgcctgtccgttccagaaggtcgaacacctcattctgttcgtgtcgcgc
cgcgccttcgacatcgacggtctcggcgtgaagcagttgcaatatttcttcgacgaggga
tgggtcaaggagccggctgatatcttcacgctgcaaaagcgcaacgcgaagctgaagctc
gaggacatcgaaggctacggcgagacctcggtgcgcaatctgttcgccgcgatcgacagc
cggcgcaggattggcctggaacgcttcatctacgcgctcggcatgcgccatgtcggcgag
accaccgcgctggcactggcgcgcggctatggctcctgggacgcgttccacgatgcctgc
ctcaaggtcgccaagggcgacgaggaagcgatggcggagatggatgcgctcgaccagatc
ggcgacaccgtgatcaagagcatcgccgactatttcggcgagagccacaatcgcggcatc
gtcgagcggctgaccggagagctcgacgagatcatcgacgccgagaagccgaagagcaat
tcggcggtcgccggcaagaccgtggtgttcaccggatcgctcgaaatgatgacgcgcgac
gaggccaaggcgaccgccgaacggctgggcgccaaggcggccggttcggtgtcgaagaag
accgactacgtcgtcgcggggccgggcgccggctcgaagcttgccgaagcgcagaagcac
ggcgtccaggtgctgaccgaggacgagtggctgaagctgatcggggagtag
DBGET
integrated database retrieval system
