Bifidobacterium breve NCFB 2258: B2258_0636
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Entry
B2258_0636 CDS
T03122
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbrn
Bifidobacterium breve NCFB 2258
Pathway
bbrn03030
DNA replication
bbrn03410
Base excision repair
bbrn03420
Nucleotide excision repair
bbrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B2258_0636
03410 Base excision repair
B2258_0636
03420 Nucleotide excision repair
B2258_0636
03430 Mismatch repair
B2258_0636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbrn03032
]
B2258_0636
03400 DNA repair and recombination proteins [BR:
bbrn03400
]
B2258_0636
Enzymes [BR:
bbrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B2258_0636
DNA replication proteins [BR:
bbrn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B2258_0636
DNA repair and recombination proteins [BR:
bbrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B2258_0636
NER (nucleotide excision repair)
GGR (global genome repair) factors
B2258_0636
MMR (mismatch excision repair)
DNA ligase
B2258_0636
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B2258_0636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
AHJ20850
LinkDB
All DBs
Position
790176..792968
Genome browser
AA seq
930 aa
AA seq
DB search
MSTNEQLAWDFDDGDAAEIRPDEGVTRFAPGSEQWVAALDATDDDAMRLDRLDVNTLNAE
VAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSLDNPQSPTHRV
GGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPLPMSCEVKIDGLA
LNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPDFVEIRGEVFMRW
DDFHTLNSEQEDAGRALFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVIADQSQAYDLYAKWGVPVSPHNRSVTSFHEILDMIDYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGRESELREFVMPEF
CPSCGAKLAPAKEGDKDIRCPNVESCPAQLTERVISLGSRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNIAEILVAPGEEPEPYEPAAGLELPPKQTPVLSNESGLFALTVADLKD
VQVWREAAIVEVHEVVDANGKKKKVRKRVGGSGLWHQVPAFWTAPTAAKRLTAKQLAERA
QVATATAAAAEGIEPAVVQSARGSASDIMPGSSGEAAVLSDAKPAFVASRYPEYDVPADA
VIVRVDHKTTRTGVTDVPVYIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTAR
LIASAMGSLGAIENATVEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGETLRAWQAAGV
GVDVAETSTLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVVGEN
AGSKAAKAEELGIPMLNEAQFAQLLENGSI
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacagttggcatgggatttcgacgatggggatgcggccgagatccgg
cccgacgaaggcgttactcgctttgcccccggttccgagcagtgggtggccgcgcttgac
gccaccgatgatgacgcgatgcggctcgatcgtcttgacgtcaatacgctcaatgccgag
gtcgcggcgcgtctgtgggctcgtgtggccgcttgggtggaggccgaccagatcgcctac
tacatcgatgatgcgcccgtcagctccgatgccgcctatgatgcgcgcctgcgttgcctg
caaaagcttgaggcggcgttcccctcgctggacaatccgcagtcgcccacccatcgagtt
ggaggctcgttctccaacgatttcacttccgtgcggcatccaagccgcatgatgagcctt
gatgatgtcttttctatcgaggaactcaaggactggtacgattcggtgattcgcgatctc
gattggccggacggcaagccgttgccaatgagctgcgaggtcaagatcgatggtctggca
ttgaatctcatctatcgaggcggtgtgctggagcaggggctgactcgtggcgatggcgtc
accggtgaagacatcacactgaacgtgcgcactatcggctccatcccggcgcagcttggt
gggcctaaagaggatattccggacttcgtggaaatccgcggcgaagtgttcatgcgttgg
gatgattttcatacactcaatagcgagcaggaggatgcaggccgagcgcttttcgccaat
ccgcgcaacgccgcagccggttcgttgaggcagaaggatccgcgcatcaccgccactcgc
cggctgagcttctatgcgcatggtttagggcagctcacttggggacctgatcatcctcgt
ggcacccatgacgtgatagccgaccaatcgcaagcctatgatttgtatgccaagtggggc
gtgccggtctctcctcacaatcgttcggtcacgtccttccatgagattctcgacatgatc
gattactacggcgagcaccgtggtgatatcgaacatgcgcttgacggcatcgtcgtcaag
gtcgatgaccttggcctgcaacgcacccttggcgccacttcgcgggcgccgcgttgggcc
atcgcctataagtacccgccggaagaggtcaatactgagctgctcaacatcaccgtgcag
gtggggcgtactggtcgtgtgacgccggttgcggtgttgaaaccggtgtatgtggctggt
tccactgtggctcgcaccacgttgcacaatggtttcgaggtcaagcgcaagggcattctc
attggtgacacggtcgtggtgcgcaaggccggtgatgtgattcccgaactggtcgggccg
gtgctggagcgtcgcaaggggcgtgagagcgaactgagagaattcgtcatgcccgagttc
tgcccgtcatgcggcgcgaaactggctcccgccaaggagggcgataaggatattcgctgc
ccgaacgtggaaagctgcccagcgcagctcaccgagcgtgtgatttcgttgggctcccgc
aaggccttcgacatcgagcatctgggcgagcagtcggccatcgcgctgaccaatcctgag
gagaaccgtcccgattctgtggcgacctatgcgccgaatatcgcggagatcctggtcgct
cccggcgaggaaccggaaccttacgagcctgcggctggtctggaattgcctcccaagcaa
acgcctgtgctgtccaatgaatcaggcttgttcgctctgactgtcgccgatctgaaagat
gtgcaggtatggcgtgaggctgcgattgtcgaagtgcatgaagtggtcgatgccaacggc
aagaagaagaaagtgcgcaagcgcgtgggcggctctggcctgtggcatcaggtgcccgct
ttctggacggctcctacggcggccaagagacttaccgccaagcagttggctgagcgtgcg
caggtggcgactgctacggctgctgccgcggagggaatcgaaccggctgtagtgcagtcg
gcacgggggagtgcatcggacatcatgcccggctcatctggcgaagccgcggttttgtct
gatgcgaagccggcctttgtcgcatcgcgctacccggaatatgacgtgccggctgatgcg
gttatcgttcgcgtcgaccacaaaaccacgcgcacgggcgtcactgatgtgccggtgtat
atcaggcccggcgagaatacgcgcaagatgttcgacgagatggacaaagcccgtcacgcg
gacttgtggcgtgtgctggtggcattgtccattcgacggctcgggcctcccaccgcgcgt
ctgattgcctccgctatgggttcgttgggtgccattgaaaacgccacggtcgaggatttg
accgccatcgatggcgtcggtccggaaatcgccgaatcggtggtgaactggttcgccgcg
gcccgtgaacccggagactggcgtggcgagacgttgcgtgcgtggcaggccgccggcgtg
ggcgttgacgtagcggagaccagtacgctgccgcaaaccttggcaggtaaaaccgtggtg
gtcaccggttccttggaaggctattctcgcgactccgccaaggaggcaatcattgagcgt
ggcggtaaggcagccggttcggtgagcaagaagacggattacgtggtggtcggcgaaaac
gccggctccaaggctgccaaggctgaggaactcggcatccccatgctcaatgaggctcaa
ttcgcccaactcctcgaaaacggtagcatctga
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