Bordetella bronchialis: BAU06_18630
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Entry
BAU06_18630 CDS
T04591
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbro
Bordetella bronchialis
Pathway
bbro03030
DNA replication
bbro03410
Base excision repair
bbro03420
Nucleotide excision repair
bbro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BAU06_18630 (ligA)
03410 Base excision repair
BAU06_18630 (ligA)
03420 Nucleotide excision repair
BAU06_18630 (ligA)
03430 Mismatch repair
BAU06_18630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbro03032
]
BAU06_18630 (ligA)
03400 DNA repair and recombination proteins [BR:
bbro03400
]
BAU06_18630 (ligA)
Enzymes [BR:
bbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BAU06_18630 (ligA)
DNA replication proteins [BR:
bbro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BAU06_18630 (ligA)
DNA repair and recombination proteins [BR:
bbro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BAU06_18630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAU06_18630 (ligA)
MMR (mismatch excision repair)
DNA ligase
BAU06_18630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAU06_18630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Thiamine_BP
Motif
Other DBs
NCBI-ProteinID:
ANN68040
LinkDB
All DBs
Position
complement(4221826..4223931)
Genome browser
AA seq
701 aa
AA seq
DB search
MKPADTGVDAQEEIARLRVEIEQHNYRYYVEDAPTVSDAEYDALMRRLQALEEAHPELVT
PESPTQRVGATPLAAFGAVTHAVPMLSLGNAFDEEEVRAFDKRVADTLRAAGLLGPASQP
DYFCELKLDGLAISLRYENGKLTQAATRGDGQTGEDVTANIRTIRSIPLQLKAGAPRVLE
VRGEVLMNRRDFERLNESQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYGWGE
VHGLAGRQAGMFDEPAPGVREASTLPREAHSAMLDWLAELGLPINARHNHKAAGADGLLD
FYARVAKLRPTLSYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKYPAEEATTTLQDIE
VQVGRTGAITPVARLQPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVV
GPVLEKRPADAREFRMVTACPVCGSAIERPEGEAIARCTGGLFCAAQRKQTLLHAAGRKA
LDIEGLGEKLVDQLVERDRVKSLADIYGLTAEELAAYDRMGAKSAENVVRAIDKARTPSL
GRMLFALGIRHVGETTARDVARHFGDLDAIMNATEDQLLEVSDVGPAVAASIHRFFAEPH
NRDIVQALKRQGVHPVPEAAARDGGLAGKTFVLTGTLPNWTREEATSHILAAGGKVSGSV
SKKTAYVVAGAEAGSKLANAEKLGVPVLDEDGLKQLLGLAG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcctgcggataccggcgtcgacgcgcaggaggaaatcgcccgcctgcgcgtcgag
atcgaacagcacaattaccggtactacgtcgaggacgcgccgacggtttccgacgccgag
tacgatgccctgatgcgccggctccaggcactggaggaagcgcatcccgaactcgtcacg
cctgaatcgcccacgcaacgcgtgggcgcgacgccgctggcggcctttggcgccgtcacg
cacgcggtgccgatgctgtcgctgggcaatgctttcgacgaagaagaagttcgcgccttc
gacaagcgggtggcggacacgctgcgcgcggccggcctgctgggtccggccagccagccg
gactatttctgcgaactgaagctggacggcctggcgatcagcctgcgctatgaaaacggc
aagctcacccaggcggccacgcgcggcgacggccagaccggcgaggacgtcacggccaac
atccgcaccatccgctccatcccgctgcaattgaaggccggcgcgccccgcgtgctggaa
gtgcgtggcgaggtgctgatgaaccgccgcgatttcgaacgcctgaacgaatcgcaggcg
gcgcgcggcgaaaaggtgttcgtcaatccacgcaatgccgccgccggcagcctgcgccag
ctggacccgcgcatcacggcccaacggccgctgcgctttttcgcctatggctggggagag
gtgcacgggctggcgggccgccaggccggcatgttcgacgagcccgcgcccggcgtgcgc
gaggcctccaccctgccgcgggaagcccacagcgccatgctggattggcttgccgaattg
ggcctgcccatcaacgcccggcacaatcacaaggcggcgggcgcggacggcctgctggac
ttctacgcgcgcgtggccaagctgcgcccgacgctgtcgtatgacatcgatggcgtggtg
tacaaggtcgactccctgcccgcgcagaaagtgctgggcttcgtggcccgcgcgccccga
ttcgcgctggcgcacaagtatcccgccgaagaagccaccaccacgctgcaggacatcgag
gtccaggtcggccgtaccggcgccatcacgcccgtcgcccggctgcaaccggtctttgtc
ggcggggtcaccgtcaccaatgccaccctgcacaacgaagacgagatccgccgcaaggat
gtacgcatcggcgataccgtcatcgtgcggcgcgccggcgacgtcattccggaggtagtg
ggcccggtgctggaaaagcgcccggccgacgcccgcgagttccgcatggtcacggcctgt
ccggtctgcggctcggccatcgagcggcccgagggcgaagccatcgcgcggtgcaccggc
ggcttgttctgcgccgcgcagcgcaagcagacgctgttgcatgcggcggggcgcaaggcc
ctggatatcgaagggttgggcgaaaaactggtcgatcaactggtggaacgggaccgcgtc
aagtccctggccgacatctacggcctgacggccgaggaattggcggcctacgatcgcatg
ggcgcgaaatccgccgagaacgtggtccgcgccatcgacaaggcccgcacgcccagcttg
ggccgcatgctgttcgccctgggtatccgacatgtgggggaaaccacggcgcgcgacgtc
gcccggcatttcggcgacctggatgcgatcatgaacgcgacggaagaccagttgctggaa
gtgtccgacgtggggccggccgtggccgcgtccatccatcgcttcttcgccgaaccgcac
aatcgcgacatcgtgcaggcgctcaaacggcagggcgtgcatccggtgcccgaggcggca
gcgcgcgacggcggcctggcgggcaagacctttgtgctgacgggcacgctgcccaattgg
acgcgcgaggaagccaccagccacatcctggcggcgggcgggaaggtcagcggttcggtg
tcgaagaaaaccgcctatgtcgtggcgggcgcggaggcgggcagcaagctggccaatgcc
gaaaaactgggcgtgcccgtgctggacgaagacggcctgaagcagttgctgggcctggcc
ggctga
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