Bradyrhizobium sp. BTAi1: BBta_6162
Help
Entry
BBta_6162 CDS
T00528
Symbol
ligA
Name
(GenBank) DNA ligase (Polydeoxyribonucleotide synthase (NAD+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbt
Bradyrhizobium sp. BTAi1
Pathway
bbt03030
DNA replication
bbt03410
Base excision repair
bbt03420
Nucleotide excision repair
bbt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBta_6162 (ligA)
03410 Base excision repair
BBta_6162 (ligA)
03420 Nucleotide excision repair
BBta_6162 (ligA)
03430 Mismatch repair
BBta_6162 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbt03032
]
BBta_6162 (ligA)
03400 DNA repair and recombination proteins [BR:
bbt03400
]
BBta_6162 (ligA)
Enzymes [BR:
bbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBta_6162 (ligA)
DNA replication proteins [BR:
bbt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBta_6162 (ligA)
DNA repair and recombination proteins [BR:
bbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBta_6162 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBta_6162 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBta_6162 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBta_6162 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ABQ38086
UniProt:
A5EPJ2
LinkDB
All DBs
Position
complement(6394269..6396419)
Genome browser
AA seq
716 aa
AA seq
DB search
MPKTAKPKKPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFN
AIETRFPELVSSESPSQKVGASPSGRFKKVRHAVPMLSLDNAFAEEDVRDFVGRIARFLK
LADDRIDFSAEPKIDGLSMSLRYEGGELVTAATRGDGAEGEDVTANIRTLKDVPQKLHGR
NWPDVCEVRGEVYMTKQAFLALNERQKEAGDTIFANPRNSAAGSLRQKDPAITASRPLGF
FAYAWGEISGTPPAETQTGMIKWFEQCGFTTNPLTRLCHSVEELIAFHRSIEEQRAELDY
DIDGVVYKVDRIDWQERLGFVSRTPRWAIAHKFPAERAMTVLKDIEIQVGRTGSLTPVGK
LEPVGVGGVIVQNVTLHNEDYIKGIGNKGEVLREGRDIRIGDTVVIQRAGDVIPQVVDVV
IDKRPAQARPFHLPKTCPCPLHTDVVREETATGEEGSRARCTGEFACPYQKIEHLKLFAS
RRAFDIDGLGEKQIAFFFEQGWVKEPADIFTLQKRNAGLKLEEIEGYGETSVRNLFNAID
ARREIALERFIYALGMRHVGETTALALARGYGSWDAFHEACLKVAAGDEEAIAEMDALDQ
IGDTVIKSVAAYFAEDHNRGIVERLTQEVKILDAEKPKRHSPIATKTVVFTGTLEKMTRD
EAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKEAQKHGVQVLTEDEWLQLIAE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagacagcaaaaccgaagaagcccgtggacgttgcggaactcaccaaggcgcag
gccaaggtggaatggaaacggctcgccttggagctcgaggtccatgatcggctctactac
caggacgacgcgcccaagatctcggacgccgaatatgacgagctgcgccgtcgcttcaac
gccatcgagacacgcttcccggagctcgtgagcagcgaatctccgtcgcagaaggttggc
gcctcgccctcgggccgcttcaagaaggtccggcatgcggtgccgatgctgtcgctcgac
aacgccttcgccgaggaggatgtgcgcgacttcgtcggccggatcgcgcggttcctgaag
cttgccgatgatcgcatcgatttctcggccgagccgaagatcgacggcctgtcgatgtcg
ctgcgctatgagggcggtgaactcgtcaccgcggcgactcgtggcgatggcgcggagggg
gaggacgtcaccgccaacatccgcaccctgaaggatgttccgcagaaactgcatggtcgc
aactggcctgatgtctgcgaggtccgcggcgaggtctacatgaccaagcaggccttcctc
gcgctcaatgagcgccagaaggaggccggcgacaccatcttcgccaatccgcgcaactcc
gccgccggctcgctgcgccagaaggacccggccatcacggcctcgcggccgctcggcttc
ttcgcctatgcctggggcgagatcagcggcacaccgccggcagagacgcagaccggcatg
atcaaatggttcgagcagtgcggcttcaccaccaatccgctcaccaggctgtgccactcg
gtcgaggaactgatcgcgtttcaccgctcgatcgaggagcagcgcgccgagctcgactac
gacatcgacggcgtcgtctacaaggtcgaccgtatcgactggcaggagcggctcggattc
gtgtcgcgcacgccgcgctgggccatcgcgcataaatttcccgccgagcgcgccatgacg
gtgctcaaggacatcgagatccaggtcggccgcaccggctcgctgacgccggtcggcaag
ctggagccggtgggggtcggcggcgtcatcgtgcagaacgtcaccttgcacaacgaggac
tacatcaaaggcatcggcaacaagggtgaggtgctgcgcgagggacgcgacatccggatt
ggcgacaccgtcgtgatccagcgcgccggcgacgtcatcccgcaggtggtggacgtcgtc
atcgacaagcgtcccgcccaggccaggccatttcacctccccaagacgtgcccttgtccc
ctgcacaccgacgtcgtccgcgaggagacggccaccggtgaggagggctcgcgtgcacgc
tgcaccggcgagttcgcctgtccgtaccagaagatcgagcacctgaagctgttcgcctcg
cgccgcgccttcgacatcgatggcctcggcgagaagcagatcgcgttcttcttcgagcag
ggctgggtcaaggagcccgccgacatcttcaccctgcagaagcgcaacgccggactgaag
ctggaggagatcgagggttatggcgagacctcggtgcgcaacctcttcaacgccattgac
gcacggcgcgagatcgcgctggagcggttcatctatgcgctcggcatgcgccatgttggc
gagaccacggcgctggcgctggcgcgcggctatggttcatgggatgcctttcacgaggcc
tgcctgaaggtggccgcgggcgatgaggaggcgatcgccgagatggacgcgctcgatcag
atcggcgacaccgtgatcaagagcgtcgcggcttacttcgccgaggatcataatcgcggc
atcgtcgagcggctgacgcaggaggtgaagatcctcgatgcggagaagccgaagcgccat
tcgccgatcgcgaccaagacggtggtgttcacgggcacgctggaaaagatgacgcgcgac
gaggccaaggccaccgccgagcgactcggcgccaaagtgtcgggctcggtctcgaagaag
accgactacgtcgtcgccggtcccggcgctggctccaagctgaaggaggcccagaagcac
ggcgtccaggtgctcaccgaggacgagtggctgcagctgatcgcggagtag
DBGET
integrated database retrieval system
