Bubalus bubalis (water buffalo): 102389336
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Entry
102389336 CDS
T05912
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102389336 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102389336 (SMG6)
03032 DNA replication proteins [BR:
bbub03032
]
102389336 (SMG6)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102389336 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
102389336 (SMG6)
DNA replication proteins [BR:
bbub03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102389336 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
MCD_N
Motif
Other DBs
NCBI-GeneID:
102389336
NCBI-ProteinID:
XP_044795386
LinkDB
All DBs
Position
3:39834688..40036219
Genome browser
AA seq
1425 aa
AA seq
DB search
MAEGLERVRISASELRGILATLGPQAGSRENMKEPRQRKDNRRPDLEIYKPGLSRLRNRP
KIKEPSGSDESKIEVVNDRDSSAVGNCTQLIKDVCKDNPQQNGPVDSENIRAQESFPGTV
GQEDRSLRIIKRTKKPDMQIYQPGRRLQTVTKEATSRVEEEEILNQVEQLRVEEDECRGN
VKEEVVNRPDREEAEKSLSGDRVRAAKGEKGKRVERGEGVKKANEDSAQGKPGSAKRYSR
SDKRRNRYRTCSTSSAGSNNSAEGAGLTDSGSRRRRQDRTKERPRLKKQVSMSSTDSLDE
DRIDEPDGPRRSSERKKHSERSWSGRGEGEQKSNGKENRGTLRVTFDAETMNKDCPVVRS
AREEVDRLKPDKGSSGGGKGSEKPESKNLRQELRGRGRGILILPAHTTLSVSSAGSPEST
PLGPRLLFGTGSKGSRSWGRGGTTRRLWDPNNPEQKPALKSQTPQLHFLDTDDEVSPTSW
GDSRQAQASYYKFQNSDNPYYYPRAPGPASQYPYTGYSPLQYPVGPTNGVYPAPYYPGYP
APSGQYVCSPLPASTMSPEEVEQHMRNMQQQELHRLLRVADNQELQLSNLLSRDRISPEG
LEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDPNVENPE
QIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRC
MICQGDIARYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYY
YMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEELELSPDQWRKGKKSTFRHVGD
DTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIG
METFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKVLCVFSEEEEEQ
REDCFSEECRSVIQEQAAALGLAMFSLLVRRCTYLLKESAKAQLSSPVGEEDQDDIKVSS
FVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLELPSQVAVDVWSTLADFCNILTAVNQS
EVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYF
LEALCGQEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAE
GSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDQSHVRQMELEIRPLFLVPDTNG
FIDHLASLAQLLESRNYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFL
ERRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPT
NKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtccggatctccgcgtcggagctgcgagggatcctggcc
actctgggtccacaggccgggagcagagaaaacatgaaggagcccaggcagcgaaaagat
aacaggcgtccagatctggaaatctataagcctggcctttcccgactaagaaacagacct
aaaatcaaggaaccctctgggagtgacgaatcgaagattgaagttgttaatgacagagat
tcttctgctgttggaaattgtacccagctcattaaagatgtctgcaaagacaacccacag
caaaatggtcctgtagactcagaaaatattcgggcacaggagtcctttcctgggaccgtt
ggacaagaggatcgaagcctaagaattattaagagaacaaagaaaccagacatgcagatc
tatcagcctggaaggcgtttgcagactgttaccaaagaagccaccagccgggtggaagag
gaagaaatcctcaaccaggtagagcaactgagggtagaggaagatgagtgtaggggaaat
gtgaaagaggaggtggtgaacaggccagacagagaggaggctgaaaagagcctaagtggt
gacagagtaagggctgcaaagggagaaaaaggaaagagggtagaaaggggggagggggtg
aagaaagcgaacgaagactcagctcaggggaagccgggttctgccaagcgctactcccgc
tcagacaaacgcaggaaccgctaccgcacttgcagcaccagctcggccggcagcaacaac
agcgccgagggggctggcctgactgacagtggaagtcgccgccgccgccaggatcggacc
aaggagaggccccgactgaagaagcaggtgtctatgtcctcaaccgactccttggatgag
gacagaattgatgagcccgatggaccacggaggagctcagagaggaagaaacattcagaa
agaagctggtctggccgaggggagggagagcagaaaagcaatggtaaagaaaatcgaggt
actcttcgagttacttttgatgcagaaaccatgaacaaagattgcccagtggtgaggtcg
gccagggaagaggtggataggttaaagccagacaaaggctcgagcggtgggggcaaaggc
tctgagaagccggagtccaaaaaccttagacaggagcttcggggtcgcggccggggcatt
ctcattctccccgcccacaccaccctgtcagtcagttcagccggttctccagagtccacg
cctttgggacctcggcttttatttggaactggtagcaagggatctcggagttggggccgg
ggaggcaccactcgacgattgtgggacccaaacaatcctgaacagaaacccgctctaaag
agccagacgccacagcttcatttcttggacactgatgatgaagtcagccctacctcttgg
ggtgactcacgccaggcccaagcctcttactataagtttcagaactccgacaacccctat
tattacccccgggcaccaggccctgcctcccagtatccttacacaggctatagccctctg
cagtacccggtgggccctacaaacggtgtgtacccagcgccttactacccaggctaccca
gctccatcaggacagtatgtgtgtagccctctccctgccagcaccatgagtcctgaggag
gtggaacagcacatgaggaacatgcagcaacaggaactgcaccggctcctccgggtggct
gacaaccaagaactacaactcagcaacctgctctccagggaccgcatcagtcctgagggc
ctggagaagatggctcagctcagagctgaactgctgcagctatatgagcgctgtattcta
ttagatattgagttctctgataatcagaatgtggatcagatcctgtggaagaatgctttc
tatcaggtgattgagaagttcaggcagcttctcaaggatccgaatgttgagaacccagaa
cagattcggaacagacttttggagctcttggatgagggtagtgacttctttgatagtttg
cttcagaagctgcaggtcacttataagttcaaactggaggactacatggacggtcttgcc
attcgcagcaagccattacgaaagacagtaaaatatgccttgatcagtgcccagcgatgt
atgatttgccaaggagatattgccaggtatcgggagcaagccaacgacacggcaaattat
gggaaggcacgcagttggtacctgaaggcccagcatattgctccgaagaatgggcgccct
tataaccagttggctctgctggctgtgtatacgaggaggaagctggatgctgtctattat
tatatgcgcagtttagctgccagcaaccctatcctgactgccaaggagagtctcatgagc
ttgtttgaagagaccaaacggaaggcggaacagatggaaaagaagcaacacgaagaattg
gagctgagccctgaccagtggcggaaagggaagaaatccacttttcggcatgtaggagat
gacaccactcgcctggagatctggattcatccatcccatccccggtcctcccagggcaca
gagtctgggaaggattctgagcaggagaatgggctgggcagcctaagccccagtgatctg
aacaaaaggttcatcctcagttttctccatgcccatgggaagctgtttacccggattggg
atggagacgttccctgcagtggctgagaaggtcctcaaggagttccaggtgttgctgcag
cacagcccctctcctattggaagtacccgaatgctacagcttatgaccatcaacatgttt
gctgtacacaactcccagttgaaagtgttgtgtgtgttctctgaggaggaggaggaacag
agagaagactgcttctcggaggagtgtcgctctgtgatccaggagcaggctgcagccctg
ggcctggccatgttttctctcctggtgcgacgctgcacctacttactgaaggagtcggcc
aaagctcagctgtcctctcctgtgggggaggaggatcaagatgacatcaaggtgtcctcc
tttgtcccggacctgaaggaactgctccccagtgtgaaggtctggtcagactggatgctc
ggctacccagacacctggaaccctccgcccacctccctggagctgccctcacaggttgct
gtggatgtgtggtcgacgctggctgacttctgtaacatactgactgcagtgaatcagtct
gaggtgccactgtacaaggacccggacgatgacctcaccctcctcatcttggaagaggat
cggcttctctcgggctttgtccccttgctggctgcccctcaggacccctgctacgtggag
aaaacctcggataaggttattgcagccgactgcaaaagggtcacagtgctgaagtatttt
ctggaagccctttgtggacaagaagagcctctgctggcattcaagggtggaaaatatgtg
tcagtggcacccgtcccagacaccatgggaaaggaaatgggaagccaagagggaaaacaa
ctggaagatgaggaggaggacgtggtgattgaagactttgaggaagactcggaggccgaa
ggcagcgggggagaggacgacatcagggagcttcgggccaagaagctggctctggccaga
aagatagcggagcagcagcgtcgccaggagaagatccaggctgtcctggaggaccagagt
cacgtgcggcagatggagctcgagatcagacccttgttcctcgtaccagacaccaacggc
ttcattgaccacctggccagcctggcacagctgctggagagcaggaactacatcctggtg
gtgcccctcatcgtgatcaatgagctggatggcctggccaaggggcaggagacagaccac
cgggccgggggctatgcccgcgtggtgcaggaaaaggcccgaaagtccattgagtttctc
gagcggcgattcgagagtcgggactcttgcctgcgggccctgaccagccgtggtaatgaa
ctcgaatccatcgccttccgcagcgaggacatcactggccagctgggtaacaatgatgac
ctgatcctctcctgctgtctccactactgtaaagacaaggcaaaggacttcatgcccacc
aacaaagaggagcccatccggctgctgagggaggtggtgctgttgacagacgaccggaac
ctgcgtgtgaaggcgctgaccaggaacgtgcctgtgcgggacatcccggccttcctcacg
tgggcccaggtgggctga
DBGET
integrated database retrieval system
