Bubalus bubalis (water buffalo): 102390873
Help
Entry
102390873 CDS
T05912
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04064
NF-kappa B signaling pathway
bbub04622
RIG-I-like receptor signaling pathway
bbub04623
Cytosolic DNA-sensing pathway
bbub05160
Hepatitis C
bbub05161
Hepatitis B
bbub05162
Measles
bbub05164
Influenza A
bbub05168
Herpes simplex virus 1 infection
bbub05169
Epstein-Barr virus infection
bbub05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
102390873 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
102390873 (DDX58)
04623 Cytosolic DNA-sensing pathway
102390873 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
102390873 (DDX58)
05160 Hepatitis C
102390873 (DDX58)
05171 Coronavirus disease - COVID-19
102390873 (DDX58)
05164 Influenza A
102390873 (DDX58)
05162 Measles
102390873 (DDX58)
05168 Herpes simplex virus 1 infection
102390873 (DDX58)
05169 Epstein-Barr virus infection
102390873 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
bbub04054
]
102390873 (DDX58)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102390873 (DDX58)
Pattern recognition receptors [BR:
bbub04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
102390873 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
CCDC85
AAA_25
Motif
Other DBs
NCBI-GeneID:
102390873
NCBI-ProteinID:
XP_006060332
LinkDB
All DBs
Position
3:74120483..74165496
Genome browser
AA seq
943 aa
AA seq
DB search
MTAEQRRNLHAFCGYVRKILDPTYILSYMTPWFRDDVVQHIQAEKNNKGPMEAASLFLQV
LLELQEEGWFRGFLDALQQAGYSGLYEAIESWDFQKIEKLEEYRLLLKRLQPEFKTTINP
EDILPEISGCLINQECEEIIQISSNKGLMAGAEKMVECLLRSDKENWPKTLKLALEKEES
KFSELWMVEKGAENVQMKDLEDDEMKTLDVHIVYKEEPENQNLSQNSCSSSEVPPTYSPL
KPRNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKRFPQGRKGKVVLFAVQVP
LYEQQKSVFSEYFERFGYKVSGISGATADSISVEQIVENNDIIILTPQILVNSLKDGTIP
SLSIFTLMIFDECHNTNKHHPYNMIMFHYLDQKLGGSSDSLPQVIGLTASVGVGDAKNTA
EATEYICKLCASLDTSVVATVRDNLEELEEVVYKPQKFFRKVESRTTDRFKHIISQLMAE
TEALAKSIFEELGTVTLENLSQIQNRHFGTQKYEQWIIAVQKACMVFQMPDKEEESRICK
ALFLYTSHLRKYNDALIINEDARMKDALNYLKNFFKNVRAAGFDAIEQDLTQRFEEKLLE
LEGISMDPSNENAKLKDLCFILQEEYHLNPETRTILFVKTRALVDALKNWIEENPKLSFL
KPGILTGRGRTNQTMGMTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVILYE
YVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEKEKLNICKEKMMNESISRLQGWNEAVF
KEKIRQIQIQEKLIRDNQGKVKPVVDKKNKKLLCGKCKTFACYTADIRVVEECHFTVVRD
AFRECFVTKLHPRPKKFGSFEKKAKIFCARKDCLHDWGIHVKYKTFEIPVIKIESFVVED
VATGAQTLYAKWKDFNFEKIPFDAAEMSTCAQDLNLQGVDGLE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagagcagcggcggaatttgcacgccttctgcggctatgtcaggaagatcctg
gaccctacctacatcctgagctacatgaccccctggtttagggacgatgtggtgcagcat
attcaggccgagaaaaacaacaaggggcccatggaggctgcctcacttttcctccaggtc
ctattggagctccaggaggaaggctggttccgcggctttttggatgcccttcaacaagca
ggttattctggactttatgaagccattgaaagttgggatttccaaaaaattgaaaaattg
gaggagtatagattacttttaaagcgtttacaaccagaatttaaaaccacaatcaatcca
gaagatatccttcctgaaatatctggatgtttaattaatcaagaatgtgaagaaattatt
cagataagttccaacaaggggctgatggcaggtgcagagaaaatggttgaatgccttctc
agatcagacaaggagaactggcccaaaactttgaaacttgcattggagaaagaagagagc
aagttcagcgaactgtggatggtagagaaaggtgcagaaaatgttcaaatgaaagatctt
gaggatgatgaaatgaaaactttggacgtacacattgtctacaaagaagaaccagaaaac
cagaatcttagccagaattcctgttcttcttcagaagtgcctcctacttatagcccattg
aaaccaagaaattaccaactagagctcgctttacctgctcagaagggaaagaatacaata
atatgtgctcctactggttgtggaaaaacctttgtttccctacttatatgcgaacatcat
cttaagagatttccacaaggacgaaaggggaaagttgtcctttttgctgttcaagtccca
ctgtacgaacagcagaaatctgtgttctcagaatattttgaaagatttgggtacaaagtt
tcaggcatttctggagcgacagctgacagtatctctgtggaacagattgttgagaacaat
gacatcatcattttaacaccacagattcttgtgaacagccttaaagatgggactattcca
tcactctccatctttactttgatgatatttgatgaatgtcacaacaccaataaacaccat
ccatataatatgatcatgtttcattatctagatcagaaactgggaggatcttcagactca
ctgccccaggtcattgggctgactgcctcagttggtgttggagatgccaaaaacacagcc
gaagccacagaatatatctgcaagctgtgtgcttctctcgacacatcagtggtagcaaca
gtcagagacaacttggaggagctggaggaggttgtttacaagccccagaagtttttcagg
aaagtggaatcacggactacagacagatttaaacacatcatatctcagctgatggcagag
acagaggctctagcaaagagtatctttgaagaacttgggactgtaactcttgaaaactta
tctcaaattcaaaataggcattttgggacacagaaatatgaacagtggattatcgcagtt
cagaaagcgtgcatggtgtttcagatgccagacaaagaggaagaaagcaggatttgtaaa
gccctgtttttgtacacgtcacatttgcggaaatacaatgatgccctcattatcaatgag
gatgcacggatgaaagatgctctgaattacttgaaaaacttcttcaaaaatgtccgggca
gcaggatttgatgcaattgagcaagatctcactcagagatttgaagaaaagctgttggaa
ctagaaggtatttctatggatcccagcaatgagaacgctaaactcaaagatctctgcttc
atcttgcaagaggaataccacttaaacccagagaccagaaccatcctctttgtgaaaacc
cgagcactggtggatgccttaaagaactggattgaagaaaatcctaaactcagctttcta
aaacctggcatattgactggacgtggcagaacaaatcagacaatgggaatgaccctccca
gcacagaagtgtgcactggatgcattccgaaccaacagagacagcaagattctaattgct
acctcggttgccgatgaaggcattgacattgctcagtgcaatctggtcatcctctacgag
tatgtgggcaatgtcatcaaaatgatccagaccagaggcagaggaagagcaagaggcagc
aagtgcttccttctgactagtaatgctgatgtaatcgaaaaagaaaaactgaacatctgc
aaagaaaaaatgatgaatgagtccatttcaaggctgcagggatggaatgaagcagtattt
aaggaaaagattcgccagatacagattcaagaaaaattaatcagggataatcaaggaaaa
gtaaaacctgttgttgataagaaaaataaaaaactgctctgcggaaagtgcaaaaccttt
gcatgttacacagctgatataagagtggtggaggaatgccatttcactgtggttagagat
gctttcagggagtgcttcgtgactaagttacatcccagaccgaagaagtttgggagtttt
gagaagaaagctaagatcttctgtgccaggaaggattgcctccatgactggggaattcac
gtgaagtacaagacattcgagattccagttataaagatcgaaagttttgtggtggaagat
gttgcgactggagctcagacactgtatgcaaagtggaaggactttaattttgagaagatc
ccatttgatgctgcagaaatgtccacttgcgctcaggacctcaatctgcagggagtggat
ggccttgaatga
DBGET
integrated database retrieval system
