Bubalus bubalis (water buffalo): 102402007
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Entry
102402007 CDS
T05912
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X2
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbub03036
]
102402007 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102402007 (SMCHD1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102402007 (SMCHD1)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102402007 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_6th
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
102402007
NCBI-ProteinID:
XP_044790673
LinkDB
All DBs
Position
22:complement(24999543..25133562)
Genome browser
AA seq
1941 aa
AA seq
DB search
MAAAGGGGPSVETGEGGGGDGPRTVYLFDRREKESELGDRALQVEERSDFAAFRASVCQT
LGISPGEKFVITTTSRKEVTCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNSGVRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELLLSKEDFEKREKNKEAIYSGFIRNRKPSDSSHITNDDE
RFLQHLIAEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGNEQR
TSKEAGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPFECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGETMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIH
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PVEFQDEFGHTSQLSTDIQPVFEASGLALHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALTEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVITVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQSIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLVKANNLKLTPSNQQHKT
DERGRANFGVFSVLAPRGEHNMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDA
SFLAGGIFTDFMITVISEDDSIIKNINPARISMKMWKLANSGNRPPANAEIFSCNKIKDN
DKEDGCFYFRDKAVPNKVGTYCIQFGFTMDKANILNSEQIIVDVLPNQPVKLVPEIQPAT
PAVSNVRSVASRTLVKDLYLHITDDYNNHTGVDLVGTVMATIKGSNEEDDIPLFNGKIRT
LEFPFVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQ
QQMAALTKEKDQLSKSITVYRTLFDTSKQLLDEMKCQVEEAKVKEAQLRNELKKHNIDIS
TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLY
FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLG
SVNEDLNGQLKYLHTPDMKRKKQELDEHEKNLKLIEQKLGMTPTRKCNDSLPHPMTDCPV
PPKRIRREAARQNRIITKTDV
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggagaccggagagggtggcggaggcgac
ggccccaggacggtgtacttgtttgaccgacgggagaaggagtcggagctcggggaccgg
gcgctgcaagtcgaggagcgctcggacttcgcggcgttccgcgcctccgtgtgtcagaca
cttggcatttcacctggagagaaatttgtcattacaacaaccagtaggaaagaagttacc
tgtgataactttgatgaaactgttaaagatggagtcaccctatacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgacaattcattgtctgctacttctcgtaacagtggtgttaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtacaggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactgcca
gtacctcgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacagtcagccagaatgataagtaagcctgcagactcccaggatgttcat
gaacttttactttctaaagaagattttgagaagagggagaaaaataaagaggcaatatat
agcggatttattagaaacagaaagccgtctgattctagtcacattacaaatgatgatgaa
agatttctacagcatcttatcgcagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccatctttggacc
aggcagttaacgcatatttatcattattacatccatggtccaaaagggaatgaacagcgt
acatcaaaggaagctggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctgagggaaatacaagatgacatgcagacattgtat
ataaatacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacctaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgacgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcacctttt
gagtgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacctttatggatcttgagctaaagctgaaagacaagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagagtttgctttatggctg
aaggactgccatgaaaagtacgacaaacaaataaaattcaccctttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggccacttattcagcgatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcattgtgaaattttttctctatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactatatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaagactccctgatagactgtcagtgacttggcctgaaggagatgaatta
ttgccaaatgagatcagacctgctggaacccccattggtgcattaagaattgaaatatta
aataaaaaaggggaaacgatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacactcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcac
aagttggggaattatacattgaaattgcaagttgtcctgaatgaaagtaatgcagacact
tatgcaggaaggccactaccatctaaagcaattaaattttctgttaaagagggtaaacca
gagaaattttcgttcggtcttttggatcctccttttcgtgttggagtcccattcaatatc
cctgtggagtttcaggatgaatttggtcatactagtcaactatctactgatattcagcca
gtttttgaagcaagtggtttagctttacattatgaagaaataaccaaaggaccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacagattttaaaaattagattactt
ccaggtcctcctcgtcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacagcacag
ccaaagttgattgttcattgtaagttttcaggtgctccaaaccttccaatctatgttgtg
gattgcagtagttctggaaccagcattttatcaggaccagcaattcaagttcagaatatt
aaaaaagaccagacacttaaagcaaaaattgaaatacctagttgtaaagatgtagcacca
gtggagaagactattaagttgctccccagtagtcacgttgccagattacagatattcagt
gtggaaggacagaaggccatccagatcaaacatcaggatgaggttaactggatagcagga
gatgttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttgacagagaaaattaaagttaattggactcctgagattaacaaagagcac
ttgctgcagggtctgcttcctgatgtgcaagtgccgacatctgtgaaagacatgcgctat
tgccaggtttcattccaagacgaccatgtgtctttggaaagtgcatttacagtaagacca
cttccagatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaacggtacagatg
ggtcaagagcttcaaggagaaatagttataactgttacagatcagtatgggaatcagatt
caagcattttcaccaagttctctgtctgcattgggaattgctgggattggacttgatagc
tcacatttgaaaactacttttcagtccattccagtgattaatggaagagaattgcagaat
cctctcatcgttcaactttgtgatcagtgggataatccagcacctgtgccacaggttaaa
ataagtcttgtaaaagctaacaatttaaagctcactccttcaaaccaacagcataaaact
gatgaaaggggcagggctaattttggagtgttcagtgttttggcccctagaggagaacat
aatatgcaggttaaagccatttataacaagaataccatagaaggacccataattaagttg
atgattcttccagaccctgaaaaacccattcgtctcaatgttaaatatgacaaggatgct
tcctttttagcagggggtattttcactgattttatgatcactgttatttctgaagatgac
agtatcattaaaaatattaatccagcacgtatttccatgaaaatgtggaaactggcaaac
agtgggaaccgaccaccagcaaatgcagaaatatttagttgtaataaaataaaggataat
gacaaagaagatggctgcttctatttcagggataaagcagttcctaacaaggtggggaca
tactgtatccagtttggttttacgatggataaagcaaatattcttaacagtgagcagatt
atagtggatgttctacctaatcaacctgtgaagttagttcctgaaattcagccagctaca
ccagctgtttcaaatgttcgctcagttgccagtaggaccctggtcaaagatttgtatctt
catatcacggatgactacaacaatcatactggagttgatttggttggcactgtaatggct
accatcaaaggttctaatgaggaagatgacatacctctctttaatgggaaaattagaaca
cttgaatttccctttgtgaaaggttcagctgaaatcacgagtctagtgctagcagaaaat
agtcctggaagggatagtactgagtattttattgtgtttgagcctcggctgccagcttta
tcaagaacgttagaatcgtatatcctaccatttatgttttacaatgatgttaagaagcag
caacaaatggcagcgcttacaaaagaaaaggaccaattatccaagtctattacagtgtac
agaactttatttgataccagcaaacagcttcttgatgagatgaagtgccaagttgaagaa
gcaaaagtaaaagaggcccagttgcgaaatgaactgaaaaaacacaatattgacatttct
acaacacagcaggtgccacacattgaagcacttttgaaaagaaagctatcagaacaggaa
gaactaaagaaaaaacccagaagatcatgtactcttccaaattatactaaaggcagtgga
gatgttttgggaaagattgcacacctggcacagattgaagatgatagagctgcaatggtt
atctcttggcatctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgca
cgtcgaatttatgatgaaacccaaggtcgtcagcaggtgttgcccctcgattctatttat
aaaaagactcttccagattggaaaagacctctacctcattaccgaaatggaaaattgtat
tttaaacccattggagaccctgtctttgcccgagacttgttgacttttccagataacgta
gaacactgtgaaacagtatttggtatgctgttaggagacactattattttggataatttg
gatgctgccaatcattacagaaaagaggttgttaaaattacacactgtcctacactgctg
accagagatggagatcgcattcgaagtaatgggaagtttgggggccttcagaataaagct
cctccaatggataaactccggggaatggtgtttggagctccagtaccaaaacagtgcctg
atcttaggggagcaaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgggc
agtgtgaacgaggatcttaatgggcagctgaagtaccttcacactcccgatatgaagagg
aaaaaacaagaacttgatgaacacgaaaagaatctcaaactaatagagcaaaaactagga
atgactcccacacgtaagtgtaatgattcactgcctcacccaatgacagactgtccagtt
cctcccaagagaataagaagagaagctgcaagacaaaacaggattataaccaaaactgat
gtgtga
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