Bubalus bubalis (water buffalo): 102404987
Help
Entry
102404987 CDS
T05912
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bbub04040
]
102404987 (SCN4A)
Ion channels [BR:
bbub04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102404987 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
102404987
NCBI-ProteinID:
XP_006041679
LinkDB
All DBs
Position
3:14865094..14917806
Genome browser
AA seq
1828 aa
AA seq
DB search
MAKASLPTVVPLGPESLRPFTRESLAAIERRVLEEEARQLRNKQMEIEETEQKPRSDMEA
GKNLPLIYGDPPPEVIGIPLEDLDPYYSDKKTFIVLNKGKSIFRFSATPALYILSPFSIV
RRCAIKVLIHSLFSMFIMITILTNCVFMTMSDPPSWSKHVEYTFTGIYTFESLIKILARG
FCIDDFTFLRDPWNWLDFSVIMMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPFNDTNSTWYGNDTW
YGNDTWGGNDTWGSQESWAGNYTFDWDAYISDEGNFYFLEGSNDALLCGNSSDAGHCPEG
YECIKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIF
LGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKFKKQQEELEKAKAAQALE
GGEVDGDPAHSKDCNGSLDTSAGEKGPPRPSCGTDSGISDAMEELEEAHQKCPPWWYKCS
HKVLIWNCCTPWVKFKKIVHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDSVLNV
GNLVFTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFR
LLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCK
IAADCNLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQPMCLTVFLMVMVIGNLV
VLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIARITWGIGFAKAFLVGLLHGKVLSPK
VIMLSLGSIGEAGEAGEAPESAPEDEKKEPPPEEDGKDLKKDNHILNHMGLADGPPPSIE
LDHLNFINNPYLTIHVPIASEESDLEMPTEEETDTFSEPEDVKKPLQPLDGNSSVCSTAD
YKPPEDDPEEQAEESPEGEQPEECFTEACVQRFPFLYVDISQGRGKKWWTLRRACFKIVE
HNWFETFIVFMILLSSGALAFEDIHIEQRRVIRTILEYADKVFTYVFILEMLLKWVAYGF
KVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVV
VNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERFDITEVNNKSEC
ESLMHTGQVRWLNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPQYEVNL
YMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSK
KPQKPIPRPQNKVQGMVYDLVTQQAFDITIMILICLNMVTMMVETDDQSQLKVDILYNIN
MVFIIIFTGECVLKMLALRQYYFTVGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRV
IRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKK
ESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPNLENPGTSIRGDCG
NPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKFDP
DATQFIDYSRLSDFVDTLQEPLRIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLG
DSGEMDALKETMEEKFMAANPSKVSYEPITTTLKRKHEEVCAIKIQRAYRRHLLQRSVKQ
ASYMYRHNHDGGGEGAPEKEGLIADTMSKMYGPNNGNSGVPSKEEERGSTGDPGPAMGLR
PISPSNAPLPPAPPLGQMVRPGVKESLV
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggcgtctctgcccacggtggtgcctctgggccctgagagcctacgccccttc
acccgggagtccctggcagccatagagcgccgggtgttggaggaggaggcccggcagctg
cggaacaagcagatggagatcgaggaaaccgagcagaagccgcgcagcgacatggaggct
ggcaagaacctgccgctcatctatggggaccccccaccggaggtcatcggcatccccctg
gaggatctggatccctactacagcgacaagaagaccttcatcgtgctcaacaagggcaag
tccatcttccgcttctcagccactcctgctctctacatcctgagccccttcagcatcgtc
agacgctgcgccatcaaggtgctcatccactcgctgttcagcatgttcattatgatcacc
atcctgaccaactgcgtgttcatgaccatgagtgacccgccttcctggtccaagcacgtg
gagtacaccttcacagggatctacaccttcgagtccctcatcaagatcctggcccgaggc
ttctgcatcgatgacttcacattcctccgggatccctggaactggctggacttcagcgtc
atcatgatggcgtacctgacggaatttgtggacttgggcaacatctcagcgctgagaacc
ttccgggtgctgcgggccctgaaaaccatcacggtcatcccagggctgaagaccatcgtg
ggggccctgatccagtcggtaaaaaaactctcggacgtgatgatcctcaccgtcttctgc
ctgagcgtctttgccctggtggggctgcagctcttcatgggaaacctgcggcagaagtgt
gtgcgctggcccccgcccttcaatgacaccaactccacgtggtatggcaacgacacatgg
tacggcaacgacacctggggcggcaacgacacctggggcagccaggagagctgggccggc
aactatacctttgactgggatgcttacatcagtgatgaagggaacttctatttcctggag
ggctccaacgatgccctgctctgtgggaacagcagcgatgctgggcattgccctgagggt
tatgagtgcatcaaggccgggcggaaccccaactacggctataccagctatgacacgttc
agctgggccttcctggctctcttccgcctcatgacacaggactactgggagaacctcttc
cagctgacccttcgagcagccggcaagacctacatgatctttttcgtggtcatcattttc
ctgggctccttctacctcatcaacctgatcctggctgtggtagccatggcctacgctgag
cagaacgaggccaccctggcggaggatcaagagaaagaagaggagtttcagcagatgctg
gagaaattcaaaaaacagcaggaggagctggagaaggccaaggctgcccaggctctggaa
ggtggggaggtggacggggatccagcacacagcaaagactgcaacggcagcctggacaca
tcggcgggggagaaggggcctccgaggcccagctgcggcacagacagcggtatttccgat
gccatggaagagctggaagaggcccaccagaagtgcccaccatggtggtacaaatgttcc
cataaagtgctcatatggaactgctgcaccccgtgggtgaagttcaagaagatcgtccac
ctgatcgtcatggaccccttcgtggacctgggcatcaccatctgcatcgtgctcaacacc
ctcttcatggccatggagcattacccaatgacagaacactttgacagtgtgctcaacgtg
ggcaacctggtcttcacaggcatcttcacagccgagatggtgctgaagctcattgccatg
gacccctacgagtacttccagcagggctggaacatctttgacagtatcatcgtcaccctc
agcctggtggagctgggcctggccaatgtgcaggggctgtcggtgctccgctccttccgt
ctgctgagggtcttcaagctggccaagtcatggccgacgctgaacatgcttatcaagatc
atcggcaactcggtgggggcgctgggcaacctgacgctggtactggccatcattgtgttc
atcttcgccgtggtgggcatgcagctgtttggcaagagctacaaggagtgcgtgtgcaag
atcgccgcggactgcaacctgccccgctggcacatgcacgacttcttccactcctttctc
atcgtcttccgcatcctgtgcggggagtggatcgagaccatgtgggactgcatggaggtg
gccggccagcccatgtgcctcactgtcttcctcatggtcatggtcatcggcaacctggtg
gtcttgaacctgttcttggccctgctgctcagctccttcagtgccgacagcctggcggcc
tcggacgaggatggcgagatgaacaacctgcagattgccatcgctcgcatcacgtggggc
atcggcttcgccaaagccttcctcgtggggctgctgcatggcaaggtcctgagccccaag
gttatcatgctcagccttggaagcatcggcgaggctggggaggctggcgaggctccagaa
agtgcccccgaggatgagaagaaggagcctccgcccgaggaggatggcaaggacctcaag
aaggacaaccacatcctgaaccacatgggcctggctgacggtcctccccccagcatcgag
ttggaccacctcaacttcatcaacaacccctacctgaccatccacgtgcccatcgcctcc
gaggagtctgacctggagatgcccacagaggaggaaactgacaccttctctgagcctgag
gatgtcaagaagccgctgcagcccctggatgggaactcctccgtctgcagcactgctgac
tacaagccccccgaggacgaccccgaggaacaggccgaggagagccctgagggggagcag
cctgaagagtgcttcaccgaggcctgcgtgcagcgctttcccttcctctacgtggacatc
tcccagggtcgagggaagaagtggtggaccctccgcagggcctgcttcaagatcgtcgag
cacaactggtttgagaccttcattgtcttcatgatcctgctcagcagtggggccttggcc
ttcgaggacatccacattgagcagcggcgagtcatccgcaccatcctggagtacgctgac
aaggtcttcacctacgtcttcatcctggagatgctactcaagtgggtggcctacggcttc
aaggtgtacttcaccaatgcctggtgctggctcgacttcctcatcgtggacgtctccatc
atcagcctggtggccaactggctgggctactcggagctgggacccatcaaatccctgcgg
acgctgcgggccctgcgccccctgagggcactgtctcgattcgagggcatgagggtggtg
gtgaatgccctcctgggagccatcccctccatcatgaacgtgctactcgtctgcctcatc
ttctggctcatcttcagcatcatgggcgtcaacctatttgccggcaagttctactactgc
atcaacaccaccacctccgagagattcgacatcaccgaggtcaacaacaagtccgaatgc
gagagcctgatgcacacgggccaggtccgctggctcaacgtcaaggtcaactacgacaac
gtgggtctcggctacctctcgctcctacaggtggccaccttcaagggctggatggacatc
atgtatgctgccgtggactcccgggagaaggaagagcagccgcagtatgaggtgaacctc
tacatgtacctctatttcgtcatcttcatcatcttcggctccttcttcaccctcaacctc
ttcattggcgtcatcatcgacaacttcaaccagcagaagaagaagtttggagggaaagac
atcttcatgacagaggaacagaagaaatactataatgccatgaagaagcttggctccaag
aagcctcagaagccaattccccggccccagaacaaggtccagggcatggtgtacgacctg
gtgacccagcaggcgttcgatatcaccatcatgatcctcatttgcctcaacatggtcacc
atgatggtggagacggacgaccagagccagctcaaggtggacatcctgtacaacatcaac
atggtcttcatcatcatcttcacgggcgagtgtgtgctcaagatgctggccctgcgccag
tactacttcaccgtcggctggaatatcttcgacttcgtggtcgtcatcctgtccattgtg
ggcctggcactctcagacctgatccagaaatacttcgtgtcacccacgctgttccgtgtg
atccgcctggcgaggatcgggcgggtcctgcggctgatccgaggggccaagggcatccgg
acgctgctctttgcgctcatgatgtcactgcccgccctcttcaacattggcctcctcctc
ttcctggtcatgttcatctactccatctttggcatgtccaacttcgcctacgtcaagaag
gagtcgggcattgatgacatgtttaacttcgagacctttggcaatagcatcatctgcctc
tttgagatcaccacgtcggccggctgggatgggctcctcaaccccatcctcaacagcggg
ccccccgactgtgaccccaacctggagaacccaggcaccagcattcggggcgactgcggc
aacccctccatcggcatctgcttcttctgcagctacatcatcatttccttcctcatcgtg
gtcaacatgtacatcgccatcatcctggagaacttcaacgtggccacggaggagagcagc
gagcctcttggggaggatgacttcgagatgttctacgagacatgggagaagttcgacccc
gatgccacgcagttcatcgactacagccgcctctccgacttcgtggacaccctgcaggag
ccgctgaggatcgccaagcccaacaagatcaagctcatcacactggacctgcccatggtg
ccgggggacaagatccactgcctggacatcctctttgccctgaccaaagaggtcctgggc
gactccggggagatggacgccctcaaggagaccatggaggagaagttcatggctgccaac
ccctccaaggtctcctatgagcccatcaccaccaccctcaagaggaagcacgaagaagtg
tgcgccatcaagatccagagggcctaccgccggcatctcctgcagcgctccgtgaagcag
gcctcctacatgtaccgccacaaccatgacggcggtggggaaggggcccccgagaaggag
gggctgatcgccgacaccatgagcaagatgtacggccccaacaacgggaacagcggtgtg
ccgagcaaagaggaggagaggggctccacgggggaccccggacctgccatggggctcagg
cccatcagcccctccaacgcacccctccctcccgccccgcctctggggcagatggtgcgc
ccaggggtcaaagagtctctcgtctag
DBGET
integrated database retrieval system
