Bufo bufo (common toad): 120979454
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Entry
120979454 CDS
T07950
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X1
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03018
RNA degradation
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120979454 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
120979454 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120979454 (LSM3)
03041 Spliceosome [BR:
bbuf03041
]
120979454 (LSM3)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120979454 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
120979454 (LSM3)
Spliceosome [BR:
bbuf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120979454 (LSM3)
Complex C
U2 snRNP components
120979454 (LSM3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
120979454
NCBI-ProteinID:
XP_040264156
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All DBs
Position
9:complement(12583900..12589884)
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AA seq
102 aa
AA seq
DB search
MADDGEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgatggcgagcagcagcagaccaccaacactgtggaggagcccctggatctg
atccggctgagcctcgatgagcgcatttatgtgaagatgaggaatgaccgagagctgcgg
ggacggctgcacgcgtatgatcagcacttaaacatgattctgggagatgtagaagaaaca
gtcaccaccatagagatcgacgaggaaacctatgaggagatctacaagtccacgaagagg
aacatccccatgctttttgttagaggcgatggcgttgtgctggtcgctcctcccttgagg
gttggctga
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