Bufo bufo (common toad): 121001448
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Entry
121001448 CDS
T07950
Symbol
SMCHD1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbuf03036
]
121001448 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
bbuf03400
]
121001448 (SMCHD1)
Chromosome and associated proteins [BR:
bbuf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121001448 (SMCHD1)
DNA repair and recombination proteins [BR:
bbuf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121001448 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121001448
NCBI-ProteinID:
XP_040288451
LinkDB
All DBs
Position
5:165580004..165963870
Genome browser
AA seq
1983 aa
AA seq
DB search
MAAEQGNGGGPLLTVFLFDRRLEQSLCEEKSLRIRRGYPEFRADVCETFGIRPSEAFVIS
TTNRKQVTDSNFNGIIKDGITLYILNRIDQLLSSSTQERINFLPHYDTLIKSGMYEYYAS
EGQNPLPFALAELIDNSLSATAKNCGIRSIQIRLLFDESQGKPTIAVIDNGKGMSSAQLK
NWAVYRLSKFRRGSEGYSEDASYVPPQPVARSLNSDISYFGVGGKQAVFFMGHSTRIITK
TSDSQDIHEFLLSKDDFEKKEKNKESIYSGYIRNRKPADFSHVTEDDKNLRNLIMEEKDK
ESFTAVIVTGVQPVHIQYLKNFLHLWASQLAHIYHYYMHGPKGNVLGKPKTIPIDIEVYM
FEKAKVPKALNLREINDDMQTLYINSAADSFEFKALVEREGVVEGIIRYHPFLYDKETYP
EDPYFLSRGNEDIDEIDDDCIIVEKEARGRRPIFECFWNGRLIPYTTVQEFDWCSVPKKR
GLVPTECYNRISGVLFTNDKFEVSTNKLSFLDLGLKLQDKNTIFTRVTNGQEQRVKIDRE
FALWLKECHENYDKQIKFSGFKGVITRQDITSKRMQTPWATYTSIEWDGKTYNAGQLVKT
IKTSPLIYGRIVKFLLYGNHDGDVYATGGDVQIALEPKELYDEMKCVPICKIDRIVARSS
IRKYIEDEMAKLPDTLAISWPDGDALEENDIKPAGAVIGTLRVEILNKKGEAVQKLPGTS
HAASKKLLVELKVLLHSPSGDKEIISHISQHGGKWPYWFKKMENIAKLGDYTLKLQVVLN
ESNADKYGEKPLPSKNILFKIVEGKPFKFVVGSLDQVQVGIPFNIPLNVQDEFGHSTLLS
ADSKPVLEGSGLTIEYEELSTASELFIKGVIVRGQVKSCQGKNFTLNVTLAGLKEACQTT
KIKLLPGPPKRLKVFPDNNDLIIENGSPFPFQIEILDEVGNIVTQPKLIVHCKFIGAPNL
PVYRLDCSTTGSGILTGPPIKIQNIKKTQELKAKIEIPSCKNVKHVEKCIKLQPSRNIAK
LQILKVEGQKAIHIKHQDEIKWMAGDIMQNIIFQVFDEGDREIIITSERAEKVKVNWTPK
VPREKLLKGMLPDIEVSTSVTNVQYCQVTFHDDNVSLESAFTVKPIPDEPKHLKCNLKGE
NIIRMGEELKGEIELIVTDQFGNPIETMLPSCLDFLGVSGKNLDKGKIRKIFQESTQSII
VKGISFYVGGPLEDIELCFAWRVFQLICDXRLVAGPPSKISLGEWNEVMPASVPYIFVSG
IEVQKPLIIQLYDECDNPSPEPNLKVTLMKDNVLKSGPQLHKTDAKGEANMGLFTFTAPK
GIYSLHCKAVNNKYNVESSPIKIKVVPDPEKPASVAVKFEKGVDLXAGSVFPDFVVSILS
EDGYPIKNLKSACCSMKIWKSQTTGGKPPATAKELNCNKPRDGDKNGCFYFRDKMIPERV
EKYCIQFMYMGEKAPVLYSEQFLIDVVANKPVKLVPLSNPATPAVSNVKDEDNRTLIKNL
WLKTVDEHSNLAGVDLNGKIIAQIISTSETEKEIPRFQSNTDTLEFTFKNGSADIPSLIL
AEHSPGTDSTEYKIMFSLDCQTMEPVDVEPYYLPFMFCNDFKKQQQIAQLTKEKDNLTES
IKVFKGLFDATDHLIKEMKCQSVEATGKERLLKNELEKKKIDLPVKNQIEHINNLINKKM
AQAETLFNQPRRKCLLPSFSNCRKDVLGKIAHLACIEDEQASIVISWHLASDMDCVVTLT
TEAARRIYDETKGQQQVLPLDSIYRKGLRSWGRPLPHIRNGASCFEATGNPVYARDLLVF
SENKEQCEIVFGMLLGDTIILDNLDAANNYRKQLVQFCQCPTLLTRDGERIRGNGKFGGV
QNKAPSIRQLGKMMFGAPRPSEFETVSAEIELLKQYRDAVKRSQTVSEELEKQIKSLDSP
DMKQKKKEYEEKERSLQEIEKKLGMTPKNQNKRAEAYIDYLSMSDCPVPSKRAKKDTLRR
TST
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagagcagggcaatggcgggggtccccttctgactgttttcttgtttgaccgc
cgcttggagcagtcgttgtgtgaggagaagagcctgcggatccgaaggggttatccggag
ttccgcgcagacgtctgtgagacctttggcatcagaccaagtgaagcgtttgtcatctca
acaacaaatagaaaacaagtgaccgactctaactttaatgggatcattaaagatggcatc
actttgtatattcttaacagaattgatcagctcctgtcttcatcaacacaagagagaatt
aactttttgcctcattacgatacactgataaaaagtggaatgtatgaatattatgctagt
gaaggacaaaacccgttgccttttgcccttgcagagttaattgataattctctttcggca
acagcaaaaaattgtggcattcgaagtatacagataagattgctttttgatgaatcccaa
ggaaaaccaactattgcagttatagataatggaaaaggaatgagttcagcccagcttaaa
aattgggctgtgtacagattgtcaaagtttagaagaggatctgaaggatacagtgaggat
gcaagttatgtcccccctcagcctgttgcacgaagtctaaacagcgatatctcttacttt
ggtgttggaggaaagcaagcagttttctttatgggtcattccactcgtatcattacaaag
acatcagactcccaagatatccatgaatttttactttccaaagatgattttgagaagaaa
gagaagaacaaggaatctatttacagtggctacataagaaacagaaagcccgctgatttt
tcacatgttacagaggatgataagaacctgcgtaacctcatcatggaggagaaggataaa
gaaagcttcactgcagttattgttactggtgttcagcccgtacatatacaatatttaaaa
aatttccttcatctatgggcttcacagctagcacatatctatcattactatatgcatggg
cctaaaggaaatgtattgggtaaaccgaaaaccatacctattgacattgaggtttatatg
tttgaaaaagccaaagtacctaaagctctcaatctacgagagatcaatgatgacatgcag
actttgtatattaattctgctgctgacagctttgagtttaaagctctggttgaaagagaa
ggtgtggtagaaggaataatacgctaccatccttttctttacgacaaagaaacttaccca
gaggacccgtatttcttatcaagaggtaatgaagacattgatgaaattgatgatgactgc
atcattgtggaaaaagaagctagaggaaggagaccaatttttgaatgtttctggaatgga
agacttattccttatactacagtccaagaatttgactggtgttcagtaccgaaaaagaga
ggacttgtgcctactgagtgttataacaggatctctggagttttatttaccaatgacaaa
tttgaagtcagcacaaacaaattgagtttcctagatctggggttgaaacttcaagataaa
aacacaatttttacaagagtgacaaatggacaggaacaaagagtaaaaattgacagagaa
tttgctttgtggttaaaagaatgtcatgaaaactatgacaaacaaataaaattttctggt
ttcaaaggtgtaattacccgacaagatattacatcaaagcgtatgcaaactccttgggca
acctatacatccattgagtgggatggaaagacttataacgctggacagctggtaaaaacc
atcaaaacgtcacctctcatttatggacgtatagttaagtttctcctttatggaaaccat
gatggtgatgtttatgctacaggaggagacgttcaaattgccttggaaccaaaagagcta
tatgacgagatgaaatgcgtaccaatttgcaagattgaccgtattgtagcacgatcatct
ataaggaagtacatagaagatgaaatggcaaagttgccagatacattggctatttcatgg
cctgatggggatgctttggaagaaaatgatataaaacctgcaggagctgttataggaact
ttacgtgttgaaattctgaacaagaaaggagaagcagtgcaaaaacttcctggtacaagt
cacgccgcttcaaagaagctgttggtggaattaaaagttctgttgcattcaccaagtgga
gataaagaaattatttcccatataagtcagcatggaggaaaatggccgtactggtttaag
aaaatggagaacattgcgaagcttggtgattatacactgaaacttcaagttgttttaaat
gaaagtaatgctgacaaatatggggaaaaacctctgccttccaaaaacattttgtttaag
attgtggagggcaaaccatttaaatttgttgttggatccctggatcaagttcaagttgga
ataccattcaatataccgttaaatgttcaggatgaatttggccattctacattgctttcg
gcagacagtaagccagttttggagggaagtggtctaacgattgaatatgaagagttaagc
acagcatcagaattatttattaagggagtgattgttagaggacaagtgaagagctgccaa
ggcaagaattttacattaaatgttactttggctggtttaaaagaagcctgtcagactacg
aagatcaagttattacccgggccacccaaacgacttaaagtgttcccagataataatgat
cttattattgaaaatggttcaccttttccattccaaattgaaatcttggacgaagtaggc
aatattgtaactcagcctaagctgattgttcattgtaagtttattggggctccgaacctt
cctgtctatcggttggattgcagcactaccggcagtggtattctaactgggccccctatt
aaaattcaaaatataaagaaaacacaggaattaaaagcaaaaattgaaatacctagttgc
aagaatgtaaaacatgtggaaaaatgtattaaactgcagccaagtagaaatattgctaaa
ctccagatacttaaagtggagggtcaaaaagctattcacattaaacaccaggatgagatc
aagtggatggcaggagacatcatgcaaaatattatttttcaagtttttgatgagggggat
agagaaatcattatcacttcagaacgtgcagaaaaagtcaaggttaattggaccccgaaa
gttcccagggagaaactgctgaaaggaatgttacctgatattgaagtgtctacttccgtc
accaacgttcagtactgccaagtgacttttcatgacgataatgtttctttggagagtgcg
ttcactgtaaagcctatacctgatgaaccaaaacatttgaaatgcaatttgaaaggagag
aatattatccgcatgggtgaagagctaaaaggtgaaattgaattaattgtaacggaccag
tttgggaatccgatagaaacaatgttgccttcgtgtcttgattttttgggtgtttctgga
aaaaatcttgacaaaggaaaaatcagaaagatctttcaggaaagcactcaatctataatt
gtcaaaggaatatcattctatgttggcggacctctagaggacatagagttatgttttgca
tggagagtttttcagcttatttgcgactagaggcttgttgctgggccaccttccaaaatt
agtctgggagaatggaatgaggttatgcctgcctctgttccctacatttttgtttctggc
attgaagttcagaagcctctaattatccagttatatgatgagtgtgataatccatctcct
gagccgaatttgaaggtcacattgatgaaggacaatgttctaaagtccggtcctcagctg
cataaaactgatgctaaaggtgaagcgaatatgggattgtttactttcactgcacctaag
ggtatatattctttgcactgtaaagctgtgaataataagtataatgtggaaagttctcca
ataaagataaaagttgtgcctgatcctgaaaaaccagccagtgttgctgtaaaatttgaa
aaaggtgtggatttanctgctggaagtgtttttcctgactttgtagttagcattctttct
gaagatggctatcccattaagaaccttaaatcagcttgctgttccatgaaaatttggaag
tcacaaacaactggtggaaaacctccagctactgcaaaagagcttaactgcaataaacca
agagatggggacaaaaatggctgcttctatttcagagataaaatgatacctgagcgtgtt
gaaaagtactgtatccagtttatgtatatgggtgagaaggctcctgtactttatagtgaa
cagtttttaatagatgttgttgccaacaagcctgtgaaattggttccactctcaaaccct
gccactccagcagtgtccaatgttaaagatgaggataaccgcactttaatcaagaattta
tggctaaagactgtggatgaacacagtaacttggcaggtgttgatttgaatggtaagatc
attgcacagataataagcacttctgagaccgagaaggaaattccacgtttccagtcaaat
acagataccctcgagttcacttttaagaatggatctgctgacatccctagcctaattctt
gctgaacatagcccaggaacggacagcacagaatataagattatgttttcacttgattgc
caaaccatggaaccagtggatgtagagccctattacctcccgttcatgttttgcaatgat
tttaagaagcaacagcagattgcacagcttacaaaggagaaagacaatttaacagaatca
attaaggtttttaaaggcctttttgatgcaacagatcacctgatcaaagaaatgaaatgc
cagtcggtagaggccacgggtaaagaaaggctcctgaaaaatgaattagagaaaaagaaa
attgatttgccagtgaaaaaccagatagaacacattaataacctcataaataaaaagatg
gctcaagcagagaccttgtttaatcagcctagacggaaatgtttactgccttctttttca
aattgcagaaaggatgtcttaggaaagattgctcatttggcatgcatcgaagatgaacaa
gcttcaattgtaatttcatggcacctagctagtgatatggactgtgtggttacactgacg
actgaggctgcccgtcgtatttatgatgagactaagggtcaacaacaagtcctaccatta
gattcaatctatcggaaaggtttgcgaagctggggaaggcctttaccacacatacgtaat
ggagcaagttgctttgaagctacgggcaatccagtttatgcaagagaccttctggtattc
tcagaaaacaaggaacaatgtgaaatagtctttggaatgcttttaggtgacacaataatt
ctagataaccttgatgcagccaacaactacagaaaacagcttgttcagttttgtcagtgc
ccaacactgctgactagagatggagagagaatccgcggcaatggaaagtttggtggagtg
caaaataaagcaccctctatacgccagcttggcaaaatgatgtttggagctccaaggccc
agtgaatttgaaactgtttctgcggaaatagaactcttaaagcagtatcgtgatgcagta
aaaaggtcccagactgtaagtgaagagcttgagaagcagattaaaagcttggactcgcca
gatatgaaacagaagaaaaaggagtatgaggaaaaagaaagatctctgcaggagattgaa
aaaaaacttggtatgaccccaaaaaatcaaaacaagagagctgaagcttatatagattat
ctcagcatgtctgattgtcctgttccttcaaaacgagcgaaaaaagatacattaaggaga
acctccacatga
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