Buteo buteo (common buzzard): 142028970
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Entry
142028970 CDS
T11399
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bbut Buteo buteo (common buzzard)
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbut03036
]
142028970 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
bbut03400
]
142028970 (SMCHD1)
Chromosome and associated proteins [BR:
bbut03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
142028970 (SMCHD1)
DNA repair and recombination proteins [BR:
bbut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
142028970 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
142028970
NCBI-ProteinID:
XP_074879183
LinkDB
All DBs
Position
3:complement(23048129..23140397)
Genome browser
AA seq
2216 aa
AA seq
DB search
MRPPGDGSPLEALPTTQGPRHPPPRAEEAAGGGLGRVNRRGGCGGRARHALPPPRPPARL
LLWSPLRSRPARRRRRRRQRQRWQRRQRRRTPIRSEVAAPRPAFASRPLPFRRPPLRHRG
PPPLPGLRPSLPLGSSSFPFPGRGFRARTGQRQAGELAGQAIDTAVAAAAAIAAGRFPSL
RLRNMAAAAGGSRGARRPVLLTPRGSGDRTVFLFDRRREQADLDEKVLSYGKDNYRGFRS
AVCQAFDIATDENFVITTTNRKEITEDNFSELVQDGVTLYLLQSVDQMLLSATKERIDFL
PHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSHGKP
AVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVG
GKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHI
TSDDERFLRNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPK
GNETNAVTKDISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHV
EGEGIVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDEDCFIVEKGARGKRPIFECFWN
GRLIPYTTVEDFEWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKD
KNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPW
TMYAAIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQA
LYAEMKTVPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIG
ALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWF
KKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKTLKFTIIEGKPEKFSVGLLELPFR
VGVPFNIPLELQDEFGHATQLTTAMKPILEASGLSLQYGEVTAGTKCIIKGVTAKGCINS
CQGKNFNLKVTLPGLKEDTQIFKIRLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDE
SGNITAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQLLKARIEIL
SCKDVPPVEKIIKLLPSSHVARLQILSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDE
GEREIHITPAMAEKIKVNWTPRINREQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLE
SAFTVRPLPDEPKHIKCKLKGPNTLQMGEELQSEIDIMITDQYGNQVQTVTSACLNSLGV
SGPGLDKSNLKITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSDFLRVNLTAGSPAK
LQFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPSPEPNVKISLIKGNNLKIVPSNQQ
LKTDENGRANLGVISIHAPRGEHTLQLKALHNKTTLDCPIITLNVLPDPEKPVCLNVKYD
KNASFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWEAQSSGTRTPVDVTTFSCSKV
KDDKEDGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLSSDQIIVEVVPNDPVRLLPDSLP
ATPAVSNVRTLTSRTLVKDLYLHVMDEYNNRTGIDLVGRIIAKIKSPSEDDTEIPQFQGK
VSTIEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYCLSFMFYNDFK
KQQQMATLTRERDQLSQSIGVYRNWFDTTNQLVTEIKCQVKEAETRETHLKNELRKHQIE
LPQTNTLQYVDSLIKQKMLDQERVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAA
KVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGK
IFFRPIGNPVFARDLLAFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPT
LLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTYSGQIDLLQQYRAAVVK
LENVNKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLIEQKLGMTPSDKVTESLLQPHHML
DMSDTPIPPKRMRRETVKKLYSSEEWISSPTKKQQQQQLLQISPSELNGTPRKRKA
NT seq
6651 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgccaggcgacgggagcccgctggaggccctgccgacgacgcagggccctcgc
caccccccgccccgcgcggaagaggcggcgggcggcggcctcgggcgcgtcaaccgccgg
ggcggctgcggcggccgagcgcggcacgcgcttccaccgccgaggccgcctgcgcgcctc
ctgctctggtccccgctccggtcccgccccgcccggcggcggcggcggcggcggcagcgg
cagcggtggcagcggcggcagcggcgccggacgccaatccgttccgaggtcgcggcgccg
aggcccgctttcgcttccagacccctccccttccgccgaccgccgctgcggcaccgcggc
ccccctccccttccgggtctccgccccagcctcccgcttggctcctcctccttccccttc
cccggccggggcttccgcgcgcggaccgggcagcgccaggcgggggagctcgcgggccag
gcaatagataccgccgttgccgccgccgccgccatcgctgcgggacggtttccgtctctt
cggcttcgcaacatggcagcggcggcaggaggcagccgcggagctcgcaggccggtgctg
ctgacgcctcgcggcagcggggaccgcaccgtctttctcttcgaccggcgccgggagcag
gcggatctggacgagaaagtgctcagctacggcaaggacaactaccgcggcttccgcagc
gccgtctgccaggcatttgacatagctactgatgaaaactttgttatcaccacaacaaac
aggaaagaaattacagaagacaacttcagcgaacttgttcaagatggagtgactttgtat
ctgctacagtcagttgatcaaatgctgctttcggcaacaaaggagcgaattgacttcctg
ccccactacgatacgcttgtcaaaagtggcatgtacgagtactatgccagcgaagggcaa
aatcctttgccatttgcccttgctgagttgattgacaattctctgtcagctacatcccga
aatactggtattcggagcatacagataaaactgttgtttgatgattcccacggaaaacca
gctgttgctgtgatcgataatggaaggggaatgacttctaaacagcttaacaactgggcc
gtatacagattgtcaaagtttacaagacaaggtgacttcgagagtgatcattcaggatat
gtacgccctttgccagtgcctcgtagtttaaatagtgatatctcatattttggagttgga
ggcaaacaagcagtgttcttcgttggacagtctgccagaatgataagcaaacctgcagat
tctcaggatgttcatgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaac
aaagaagcaatatatagcggatacattcgaaacagaaagccatctgattctactcacatc
acaagtgatgatgaaagatttcttcgtaatctaatattagaagaaagggataaagagagt
ttcacagcagttgtcattacaggtgtacaaccagatcatatgcagtacttgaaaaactat
tttcatctttggacaaggcagctggcacatatctatcactattacatccatggaccaaaa
ggaaatgaaactaatgctgtaacaaaagacataagccctttcaacaacatcgacattcag
atttccatgtttgaaaaaggaaaagtaccaaagattgtcaatcttagggagatcaaagat
gacatgcagacattgtatataaatactgcagcagatagttttgagtttaaggcacatgtt
gaaggagaaggtatagtggaaggcatcatccgatatcatcccttcctgtatgataaagaa
acataccctgatgatccatgttttccatcaaaattaaacgatgatgatgatgatgaagat
tgctttatagtagaaaagggtgccagaggaaaaaggcctatttttgaatgtttttggaat
ggaagattaataccatacacaactgtggaagattttgagtggtgtgctcctccaaagaag
agaggattggcaccaattgaatgctacaacagaatttctggtgcattatttaccaatgat
aagttccaggtcagcacaaacaaactcactttcatggatctggagctgaagctaaaagat
aagaatactctgttcacaagaatcttcaacggacaggagcagcgaatgaaaattgacaga
gaatttgctttgtggctcaaagactgccatgaaaaatatgacaaacagataaaattcaca
gtctttaaaggaataactacacgtactgatttaccgtccaaaagaatgcagagcccttgg
acaatgtatgctgcaatagagtgggatgggaaaacatacaaaactggacagctggtgaaa
actgttaagactcttccaatattctatggaagtattgagaaattttttttgtatggagac
catgatggggatatatttgccactggaggagaggttcaaattgctttggaacctcaggca
ttgtatgctgaaatgaaaactgttccaatatcaaaacttgacagaacagtgtctgacaaa
gctgttaaaaaatacatagaggatgaaatggcaagacttcctgacaaattatcagtaaca
tggcctgaaggagatgagttattaccaaatgaaacaagatttgctggtacaccaatagga
gcattaagaatagaaattttgaataaaaaaggagaagcaatgcaaaaacttccaggtaca
agccacggaggttcaaagaaacttcttgttgaactcaaggttattttacattcacctact
gggaataaagaaataatttcccatatcagccagcatggaggcaaatggccatactggttt
aaaaaaatggaaaatcttcagaaacttgggaactacaccttgaaactgcaagtagtattg
aatgaaagcaatgcagacacttatgcaggaaggcctctaccatctaaaacacttaaattt
actattatagagggcaaaccagagaaattttcagttggtcttttggagcttccttttcgg
gttggagtaccttttaatattcctttggaattgcaggatgaatttggtcatgcaacacag
ctgacaactgccatgaaaccaattcttgaagctagtggtttgtcattgcagtatggagaa
gtaactgcaggaacaaagtgcatcattaagggtgtcactgctaaaggctgtataaatagt
tgccagggcaagaactttaatctgaaagttactcttcctggtttgaaagaagacacacaa
atctttaaaataagattgcagcctggccctcctcatcaactgaaagtaaaaccagattct
gaaattctaaagattgaaaatggtacagctttcccctttcaggttgaagtactggatgaa
tcaggaaatataacagcacagccaaagttgatagttcattgtaagtttttaggtgcttca
aaccttcctgtgtattctgtggactgcagtaatgcaggaacaaacattttaactggtcca
gttatacatgtacagaatatcaagaaagaccagttgctgaaagcaaggattgaaatactt
agttgtaaagatgtgccaccagtggaaaagataattaaacttcttcctagcagtcatgtt
gcaagactacagatcttaagtatggatggacaaaaagctattcaaattaaacatcaggat
gaaattaattgggttgctggcgatgtcatgcacaaccttatatttcagatgtatgatgaa
ggagaaagggagatacacataactccagctatggcagaaaaaatcaaggttaactggaca
cctagaattaacagagaacagctgattcagggattattacctgatgtaaaagtaccaaca
tcagtaaaagatgttcgttactgtctaattacttatcttgatgaccatgtgtctttggag
agtgcgttcacagtcagaccacttcctgatgaacccaaacacattaaatgtaaattaaaa
ggaccaaacacactgcagatgggtgaagaactacaaagtgaaattgatataatgattaca
gatcagtatggaaatcaggttcagacagtgacatctgcatgtctaaattccctaggagtt
tctgggcctggacttgataaatccaatttgaaaataacttggcaggaaagtactctaaca
atgagagtaaaaggtattcggtttaaaccttgtttacttggaagcaaagaattgtgcttc
gcttggcgtgaattttccgactttctcagagtaaatttaactgcaggatcccctgctaaa
ttacaatttgtggattggccagagttagaaaagcctgttgcagtgattaatggtagagaa
ttgcagaagccccttattgttcagctgtgtgatcagtggggaaatccatctcctgaacct
aatgtcaaaatcagccttataaagggtaacaacttaaagattgttccttcaaaccagcaa
cttaaaacagatgaaaatggtagggctaacctgggagttattagtattcatgcacctagg
ggagagcacactttacagctcaaagccttacacaacaagaccacattagattgtcctata
atcacattaaatgtcctgcctgatcctgagaaacctgtctgcttgaatgttaaatatgac
aaaaatgcttcttttccagcaggaggtaccttccctgattttatggttagtgttctttct
gaagatgacaacattattaaaaatattaatccagcacggatttctatgaaaatgtgggaa
gcacagagcagtggaactaggacaccagttgatgttacaacatttagctgtagtaaagtg
aaggatgacaaagaagatggtttcttctacttcagggataaagtggttccagagagagtg
ggcacttacagtatccagtttacctttgcaatggataagacaaatatgctcagcagtgac
cagattatagttgaagttgtacctaatgaccctgtacgcttgttacctgattctttacca
gctacgccagcagtttccaatgttcgaactcttactagccgtacactggtcaaggattta
tacctccatgtaatggatgaatacaataaccgcactggaattgatctagttggcagaata
atagcaaaaattaaaagccccagtgaagatgacacagagatcccacagtttcaggggaaa
gtcagtacaattgagtttccatttgacagaggatcagctgaaattaatctagtgctggct
gaaaacagccctggaagagatagcactgaatatattcttgtatttgagccagatctgcca
gctttgaaaaaacctttggaaccatactgtctgtcatttatgttttacaatgatttcaag
aagcagcaacagatggcaacccttacaagggagagagaccaattatctcagtccataggt
gtttacagaaattggtttgatactactaatcagcttgtaactgaaattaaatgtcaggtt
aaagaagctgaaacaagagaaactcacctgaagaacgaactgagaaaacaccaaattgaa
ttaccacagacaaacacacttcagtatgtggattctcttataaaacaaaagatgttggat
caagaaagagtaatgaaacagccaagacgaacttgtaccctcccaaactatccaaaaggc
aaccaggatattttaggcaagattgcacatttagctcaaattgaggataatgaagcagca
aaagttatctcttggcatttggcaagcgacatggactgtgtagtcacactgactactgaa
gctgctcgttctatttttgatgaaactcaaggtcgacaacaagtgttaccccttgattct
atttacaagaagacactccctgattggaacaggcctttgcctcacttaagaaatggaaaa
atcttcttcagacctattggaaatcctgtatttgccagagatctgttagcatttccagat
aatgtagagcattgtcaaacagtgtttgggatgctcttgggtgacactatcattatagat
aacttggatgctgccaaccattacagaaaagaggttgtaaaaattacacattgccctact
ttgctgactagggaaggagacaggattcgcagcaatggaaaatttggaggccttcagaat
aaagctcctccaatggacaaactcagaggaatggtatttggagcacctatgccaaaactt
tactctacttactctggacagatagaccttcttcagcaataccgtgcagcagtggtgaaa
cttgaaaatgtgaataaggaccttgatttacatttgcagtcacttaacactccagaaatg
cagaagaaaaaacaggaacttgccgaacaagagaaaagcctcaagctaatagagcaaaaa
ttgggtatgactccatcagataaagtcactgaatcattacttcagccacatcatatgtta
gatatgtctgatacccccatccctcccaaaagaatgcgaagagaaacagtaaaaaaattg
tatagctcagaagaatggatctcctctcccacaaagaagcagcagcaacagcaactgctg
caaatatccccttcagaacttaatgggactccacgaaagagaaaggcataa
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integrated database retrieval system
