KEGG   Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1198
Entry
HMPREF9228_1198   CDS       T01844                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bbv  Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03030  DNA replication
bbv03410  Base excision repair
bbv03420  Nucleotide excision repair
bbv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bbv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HMPREF9228_1198 (ligA)
   03410 Base excision repair
    HMPREF9228_1198 (ligA)
   03420 Nucleotide excision repair
    HMPREF9228_1198 (ligA)
   03430 Mismatch repair
    HMPREF9228_1198 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bbv03032]
    HMPREF9228_1198 (ligA)
   03400 DNA repair and recombination proteins [BR:bbv03400]
    HMPREF9228_1198 (ligA)
Enzymes [BR:bbv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HMPREF9228_1198 (ligA)
DNA replication proteins [BR:bbv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HMPREF9228_1198 (ligA)
DNA repair and recombination proteins [BR:bbv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HMPREF9228_1198 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HMPREF9228_1198 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HMPREF9228_1198 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HMPREF9228_1198 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT Nlig-Ia BRCT_2 Zn_Ribbon_1
Other DBs
NCBI-ProteinID: AEF26420
LinkDB
Position
complement(1363745..1366537)
AA seq 930 aa
MSTNEQLAWDFDDGDAAEVRPDEGVTRFAPGSEQWVAALDATDDDAMRLDRLDVNTLNAE
VAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSLDNPQSPTHRV
GGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPLPMSCEVKIDGLA
LNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRALFANPRNAAAGSLRQKNPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVIADQSQAYDLYAKWGVPVSPHNRSVTSFHEILDMIDYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGRESELREFVMPEF
CPSCGAKLAPAKEGDKDIRCPNVESCPAQLTERVISLGSRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEILVAPGEEPDPYEPAPGLALPAVQRPVLSNESGLFALTAVDLRD
VQVWREAAIVEVHEVVDANGKKKKVRKRVGGSGLWHQVPAFWTAPTVAKRLTAKQLAERA
QVATATAAAAEGIEPAVVQSARGSASDIMPGSSGEAAVLSDAKPAFVASRYPEYDVPADA
VIVRVDHKTTRTGVTDVPVYIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTAR
LIASAMGSLGAIENATVEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGETLRAWQAAGV
GVDVAETSTLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVVGEN
AGSKAAKAEELGIPMLNEAQFAQLLENGSI
NT seq 2793 nt   +upstreamnt  +downstreamnt
atgagcacgaacgaacagttggcatgggatttcgacgatggggatgcggccgaggtccgg
cccgacgaaggcgttacccgctttgcccccggttccgagcagtgggtggccgcgcttgac
gccaccgatgatgacgcgatgcggctcgatcgtcttgacgtcaatacgctcaatgccgag
gtcgcggcgcgtctgtgggctcgtgtggccgcttgggtggaggccgaccagatcgcctac
tacatcgatgatgcgcccgtcagctccgatgccgcctatgatgcgcgcctgcgttgcctg
caaaagcttgaggcggcgttcccctcgctggacaatccacagtcgcccacccatcgagtt
ggcggctcgttctccaacgatttcacttccgtgcggcatccaagccgcatgatgagcctt
gatgatgtcttttctatcgaggaactcaaggactggtacgattcggtgattcgcgatctc
gattggccggacggcaagccgttgccaatgagctgcgaggtcaaaatcgatggtctggca
ttgaatctcatctatcgaggcggcgtgctggagcaggggctgactcgtggcgatggcgtc
accggtgaagacatcacactgaacgtgcgcactatcggctccatcccggcgcagcttggt
gggcctaaagaggatattccggacttcgtggaaatccgcggcgaagtgttcatgcgttgg
gatgattttcatacactcaataacgagcaggaggatgcaggccgagcgcttttcgccaat
ccgcgcaacgccgcagccggttcgttgaggcagaagaatccgcgcatcaccgccactcgc
cggctgagcttctatgcgcatggtttagggcagctcacttggggacctgatcatcctcgt
ggcacccatgacgtgatagccgaccaatcgcaagcctatgatttgtatgccaagtggggc
gtgccggtctctcctcacaatcgttcggtcacgtccttccatgagattctcgacatgatc
gattactacggcgagcaccgcggtgatatcgaacatgcgcttgacggcatcgtcgtcaag
gtcgatgaccttggcctgcaacgcacccttggcgccacttcgcgggcgccgcgttgggcc
atcgcctataagtacccgccggaagaggtcaatactgagctgctcaacatcaccgtgcag
gtggggcgtactggtcgtgtgacgccggttgcggtgttgaaaccggtgtatgtggccggt
tccactgtggctcgcaccacgttgcacaatggtttcgaggtcaagcgcaagggcattctc
attggtgacacggtcgtggtgcgcaaggccggtgatgtgattcccgaactggtcgggccg
gtgctggagcgtcgcaaggggcgtgagagcgaactgagagaattcgtcatgcccgagttc
tgcccgtcatgcggcgcgaaactggctcccgccaaggagggcgataaggatattcgctgc
ccgaacgtggaaagctgcccagcgcagctcaccgagcgtgtgatttcgttgggctcccgc
aaggccttcgatatcgagcatctgggcgagcagtcggccatcgcgctgaccaatcctgag
gaaaaccgtcccgattctgtggcgacctatgcgccgaatatcacggagattctggtagct
cccggtgaggaaccggacccttacgagccggctccgggattggcattgccggcagtgcag
cggccggtgctttcgaacgaatccggactgttcgccttgactgccgtcgatttgcgtgac
gtgcaggtgtggcgtgaggctgcgattgtcgaagtgcatgaagtggtcgatgccaatggc
aagaagaagaaagtgcgcaagcgcgtgggcggctctggcctgtggcatcaggtgcccgct
ttctggacggctcctacggtggccaagagacttaccgccaagcagttggctgagcgtgcg
caggtggcgactgctacggctgctgccgcggagggaatcgaaccggctgtagtgcagtcg
gcacgggggagtgcatcggacatcatgcccggctcatctggcgaagccgcggttttgtct
gatgcgaagccggcctttgtcgcatcgcgctacccggaatatgacgtgccggctgatgcg
gttatcgttcgcgtcgaccacaaaaccacgcgcacgggcgtcactgatgtgccggtgtat
atcaggcccggcgagaatacgcgcaagatgttcgacgagatggacaaagcccgtcacgcg
gacttgtggcgtgtgctggtggcattgtccattcgacggctcgggcctcccaccgcgcgt
ctgattgcctccgctatgggttcgttgggtgccattgaaaacgccacggtcgaggatttg
accgccatcgatggcgtcggtccggaaatcgccgaatcggtggtgaactggttcgccgcg
gcccgtgaacccggagactggcgtggcgagacgttgcgtgcgtggcaggccgccggcgtg
ggcgttgacgtagcggagaccagtacgctgccgcaaaccttggcaggtaaaaccgtggtg
gtcaccggttccttggaaggctattctcgcgactccgccaaggaggcaatcattgagcgt
ggcggtaaggcagccggttcggtgagcaagaagacggattacgtggtggtcggcgaaaac
gccggctccaaggctgccaaggctgaggaactcggcatccccatgctcaatgaggctcaa
ttcgcccaactcctcgaaaacggtagcatctga

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