Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1198
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Entry
HMPREF9228_1198 CDS
T01844
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03030
DNA replication
bbv03410
Base excision repair
bbv03420
Nucleotide excision repair
bbv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9228_1198 (ligA)
03410 Base excision repair
HMPREF9228_1198 (ligA)
03420 Nucleotide excision repair
HMPREF9228_1198 (ligA)
03430 Mismatch repair
HMPREF9228_1198 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbv03032
]
HMPREF9228_1198 (ligA)
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1198 (ligA)
Enzymes [BR:
bbv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF9228_1198 (ligA)
DNA replication proteins [BR:
bbv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF9228_1198 (ligA)
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF9228_1198 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9228_1198 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF9228_1198 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF9228_1198 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
AEF26420
LinkDB
All DBs
Position
complement(1363745..1366537)
Genome browser
AA seq
930 aa
AA seq
DB search
MSTNEQLAWDFDDGDAAEVRPDEGVTRFAPGSEQWVAALDATDDDAMRLDRLDVNTLNAE
VAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSLDNPQSPTHRV
GGSFSNDFTSVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPDGKPLPMSCEVKIDGLA
LNLIYRGGVLEQGLTRGDGVTGEDITLNVRTIGSIPAQLGGPKEDIPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRALFANPRNAAAGSLRQKNPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVIADQSQAYDLYAKWGVPVSPHNRSVTSFHEILDMIDYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGRESELREFVMPEF
CPSCGAKLAPAKEGDKDIRCPNVESCPAQLTERVISLGSRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEILVAPGEEPDPYEPAPGLALPAVQRPVLSNESGLFALTAVDLRD
VQVWREAAIVEVHEVVDANGKKKKVRKRVGGSGLWHQVPAFWTAPTVAKRLTAKQLAERA
QVATATAAAAEGIEPAVVQSARGSASDIMPGSSGEAAVLSDAKPAFVASRYPEYDVPADA
VIVRVDHKTTRTGVTDVPVYIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTAR
LIASAMGSLGAIENATVEDLTAIDGVGPEIAESVVNWFAAAREPGDWRGETLRAWQAAGV
GVDVAETSTLPQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVVGEN
AGSKAAKAEELGIPMLNEAQFAQLLENGSI
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacagttggcatgggatttcgacgatggggatgcggccgaggtccgg
cccgacgaaggcgttacccgctttgcccccggttccgagcagtgggtggccgcgcttgac
gccaccgatgatgacgcgatgcggctcgatcgtcttgacgtcaatacgctcaatgccgag
gtcgcggcgcgtctgtgggctcgtgtggccgcttgggtggaggccgaccagatcgcctac
tacatcgatgatgcgcccgtcagctccgatgccgcctatgatgcgcgcctgcgttgcctg
caaaagcttgaggcggcgttcccctcgctggacaatccacagtcgcccacccatcgagtt
ggcggctcgttctccaacgatttcacttccgtgcggcatccaagccgcatgatgagcctt
gatgatgtcttttctatcgaggaactcaaggactggtacgattcggtgattcgcgatctc
gattggccggacggcaagccgttgccaatgagctgcgaggtcaaaatcgatggtctggca
ttgaatctcatctatcgaggcggcgtgctggagcaggggctgactcgtggcgatggcgtc
accggtgaagacatcacactgaacgtgcgcactatcggctccatcccggcgcagcttggt
gggcctaaagaggatattccggacttcgtggaaatccgcggcgaagtgttcatgcgttgg
gatgattttcatacactcaataacgagcaggaggatgcaggccgagcgcttttcgccaat
ccgcgcaacgccgcagccggttcgttgaggcagaagaatccgcgcatcaccgccactcgc
cggctgagcttctatgcgcatggtttagggcagctcacttggggacctgatcatcctcgt
ggcacccatgacgtgatagccgaccaatcgcaagcctatgatttgtatgccaagtggggc
gtgccggtctctcctcacaatcgttcggtcacgtccttccatgagattctcgacatgatc
gattactacggcgagcaccgcggtgatatcgaacatgcgcttgacggcatcgtcgtcaag
gtcgatgaccttggcctgcaacgcacccttggcgccacttcgcgggcgccgcgttgggcc
atcgcctataagtacccgccggaagaggtcaatactgagctgctcaacatcaccgtgcag
gtggggcgtactggtcgtgtgacgccggttgcggtgttgaaaccggtgtatgtggccggt
tccactgtggctcgcaccacgttgcacaatggtttcgaggtcaagcgcaagggcattctc
attggtgacacggtcgtggtgcgcaaggccggtgatgtgattcccgaactggtcgggccg
gtgctggagcgtcgcaaggggcgtgagagcgaactgagagaattcgtcatgcccgagttc
tgcccgtcatgcggcgcgaaactggctcccgccaaggagggcgataaggatattcgctgc
ccgaacgtggaaagctgcccagcgcagctcaccgagcgtgtgatttcgttgggctcccgc
aaggccttcgatatcgagcatctgggcgagcagtcggccatcgcgctgaccaatcctgag
gaaaaccgtcccgattctgtggcgacctatgcgccgaatatcacggagattctggtagct
cccggtgaggaaccggacccttacgagccggctccgggattggcattgccggcagtgcag
cggccggtgctttcgaacgaatccggactgttcgccttgactgccgtcgatttgcgtgac
gtgcaggtgtggcgtgaggctgcgattgtcgaagtgcatgaagtggtcgatgccaatggc
aagaagaagaaagtgcgcaagcgcgtgggcggctctggcctgtggcatcaggtgcccgct
ttctggacggctcctacggtggccaagagacttaccgccaagcagttggctgagcgtgcg
caggtggcgactgctacggctgctgccgcggagggaatcgaaccggctgtagtgcagtcg
gcacgggggagtgcatcggacatcatgcccggctcatctggcgaagccgcggttttgtct
gatgcgaagccggcctttgtcgcatcgcgctacccggaatatgacgtgccggctgatgcg
gttatcgttcgcgtcgaccacaaaaccacgcgcacgggcgtcactgatgtgccggtgtat
atcaggcccggcgagaatacgcgcaagatgttcgacgagatggacaaagcccgtcacgcg
gacttgtggcgtgtgctggtggcattgtccattcgacggctcgggcctcccaccgcgcgt
ctgattgcctccgctatgggttcgttgggtgccattgaaaacgccacggtcgaggatttg
accgccatcgatggcgtcggtccggaaatcgccgaatcggtggtgaactggttcgccgcg
gcccgtgaacccggagactggcgtggcgagacgttgcgtgcgtggcaggccgccggcgtg
ggcgttgacgtagcggagaccagtacgctgccgcaaaccttggcaggtaaaaccgtggtg
gtcaccggttccttggaaggctattctcgcgactccgccaaggaggcaatcattgagcgt
ggcggtaaggcagccggttcggtgagcaagaagacggattacgtggtggtcggcgaaaac
gccggctccaaggctgccaaggctgaggaactcggcatccccatgctcaatgaggctcaa
ttcgcccaactcctcgaaaacggtagcatctga
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