Bdellovibrio bacteriovorus W: BDW_00235
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Entry
BDW_00235 CDS
T03036
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbw
Bdellovibrio bacteriovorus W
Pathway
bbw03030
DNA replication
bbw03410
Base excision repair
bbw03420
Nucleotide excision repair
bbw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BDW_00235
03410 Base excision repair
BDW_00235
03420 Nucleotide excision repair
BDW_00235
03430 Mismatch repair
BDW_00235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbw03032
]
BDW_00235
03400 DNA repair and recombination proteins [BR:
bbw03400
]
BDW_00235
Enzymes [BR:
bbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BDW_00235
DNA replication proteins [BR:
bbw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BDW_00235
DNA repair and recombination proteins [BR:
bbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BDW_00235
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDW_00235
MMR (mismatch excision repair)
DNA ligase
BDW_00235
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BDW_00235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Nlig-Ia
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AHI04557
LinkDB
All DBs
Position
complement(46697..48706)
Genome browser
AA seq
669 aa
AA seq
DB search
MSKKRHEELKKIISHHDYQYHVLDQPQISDHEYDMLFAELIKLESASPEKLDLSNSPSQR
VGASPLSAFEKAAHRLPMLSLSNSFSDEDIYDFNERVQKGLNTQETIEYLCEPKFDGLSL
ELVYENGTLTKAITRGDGTIGEDVTQNAKTIRNIPLLLNTDNPPSLLEVRGEVLMLKKDF
AVLNEAQQESGLPVFANPRNAAAGSVRQLDSKITANRPLRFFGYALGAFEGITLSSQNEV
QEYFSKIGIPTLSGKIKKELLKICNGPEEITQYFKKVEEIRRELDFDIDGVVIKVNSLAL
QEDLGMVARSPRWATAAKFKPEQGQTTIEDIIVQVGRTGALTPVAIMAPVKVGGVTITNA
TLHNQDEIDRKDIRIGDTVIIQRAGDVIPEVVSVVLEKRPKSSLKFTIPNECPVCHEPVQ
KIEGEVVTRCVNPLCTALITESLKHFVGRRAMNLDKVGDKIIEALVQSKLLKRFSDFYRL
TKEDILSLGRQGDKSSENILNSIEQSKKTTLSRLIFALGIRFVGEQTAKSLADHFLTIDA
FLAAEPEEILKVPDVGGKVQESITTWLNNEELTNDVREMLNLGVEIEAPKRSTEGALLGK
TFLITGTLPVKRDEAKDLIEENGGKILSSVSSKLDYLVAGDDPGSKVEKAQAKNIPILSW
DDLLNLIQS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaagcgccacgaagagttaaaaaagatcatcagccatcatgattaccaatac
cacgtactggatcagcctcagatttcagatcatgaatatgatatgctttttgccgagcta
ataaaattagaatcagcaagtcccgagaagctagaccttagcaactctcctagccaacgc
gtaggggcaagccctttaagtgcctttgaaaaagccgcccatcgtcttccaatgctttcc
ttatccaacagctttagcgatgaggatatttatgactttaacgagcgcgttcaaaagggt
cttaacacccaagagaccattgaatatctgtgtgaacccaagtttgatgggctttccctt
gagctcgtctatgaaaatggaacccttaccaaggccatcactcgtggcgatggcaccatc
ggcgaagatgttacgcagaatgctaaaaccattcgcaatatccctctgcttttaaatact
gacaatcctccaagtttgctagaggtacgcggtgaagtgcttatgttaaaaaaggacttt
gccgtgcttaatgaggctcaacaagaaagcggcctcccagtttttgccaaccctcgaaat
gcagcagcaggatctgtacgtcagctcgattcaaaaatcacggccaaccgacctctgcgc
tttttcggttatgctctaggagcttttgaggggatcactctttctagtcagaatgaagtt
caagaatactttagcaagataggaatccccactctttcgggcaaaataaaaaaagaactt
cttaaaatttgtaacggccctgaagagatcactcagtacttcaaaaaagtggaggagatt
cgcagagagcttgattttgatatcgacggcgtggtcattaaagtaaacagtctcgcactc
caagaagatcttggcatggtcgcacgtagtccgcgatgggcgacggctgcgaaattcaaa
ccagaacagggtcaaacaacaattgaggatattattgttcaagttggtcgcactggcgcc
cttacgcccgttgcaattatggctccggttaaggttggcggcgttacgattacaaatgcc
acccttcacaatcaagatgaaatagatcgtaaagatattcgcatcggagacacagtcatc
attcagcgcgctggagatgtgatccctgaagttgtctctgtggttctagaaaaaagacct
aaaagcagccttaagtttactatccctaatgagtgcccagtctgccatgagcctgttcaa
aaaatcgaaggcgaagtggtcactcgctgtgtaaatcccctttgtacggccctcatcacc
gaatcccttaaacacttcgtcggccgtcgggcaatgaatcttgataaggttggtgataag
atcatcgaagccctcgtgcagagtaaactactcaaaagattctctgatttttatcgcctt
accaaggaagacatcctgagcctggggcgccaaggagacaagtcttccgaaaacatcctc
aatagcatcgaacagagtaaaaaaacgacactgtcacgtttgatctttgccctgggtatt
cgctttgttggagaacaaacagcaaagagccttgcagatcactttttaaccattgatgct
tttcttgcggcggaacctgaagagatcctcaaagttcctgatgtcggcggaaaagttcaa
gagtccattacaacgtggctaaataatgaagagctgaccaacgatgtccgagagatgctg
aacttaggagttgagattgaagctcctaagcgttccactgagggtgcacttcttggaaaa
acgttcctcatcacaggcactcttcccgttaaaagagatgaggcaaaagatctcattgaa
gaaaatggcggaaagattctaagctctgtatcttcaaagttagactatctcgtggcggga
gatgatccgggatctaaggtagaaaaagctcaagctaaaaacatccctattctttcatgg
gatgatctcttaaatttgattcagtcttaa
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integrated database retrieval system
