Bordetella bronchiseptica S798: BBS798_3584
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Entry
BBS798_3584 CDS
T03637
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bbx
Bordetella bronchiseptica S798
Pathway
bbx03030
DNA replication
bbx03410
Base excision repair
bbx03420
Nucleotide excision repair
bbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBS798_3584 (ligA)
03410 Base excision repair
BBS798_3584 (ligA)
03420 Nucleotide excision repair
BBS798_3584 (ligA)
03430 Mismatch repair
BBS798_3584 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbx03032
]
BBS798_3584 (ligA)
03400 DNA repair and recombination proteins [BR:
bbx03400
]
BBS798_3584 (ligA)
Enzymes [BR:
bbx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBS798_3584 (ligA)
DNA replication proteins [BR:
bbx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBS798_3584 (ligA)
DNA repair and recombination proteins [BR:
bbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBS798_3584 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBS798_3584 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBS798_3584 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBS798_3584 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAO70309
LinkDB
All DBs
Position
complement(3876171..3878261)
Genome browser
AA seq
696 aa
AA seq
DB search
MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPD
SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY
FCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPRVLEVRG
EVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHG
LPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYE
RIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQV
GRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPV
LEKRPADAREFVMLTACPICGSAIERPEGEAIARCTGGLFCAAQRKQTLLHAAGRKALDI
EGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRL
LFALGIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNRE
IVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKK
TAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALLGL
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggcaggtcctacgccgcagcaagcgatcgcgcgcctgcgggccgagatcgag
cagcacaatatccgttattacgtccacgacgatcccagcgttccggacgccgagtacgac
gcgctcatgcgcgacctgcaagcgctggaggccgaacaccccgagctggtcacgcccgat
tcgccgacgcagcgcgtgggcgccgcgccgctggccgaattcggcagcgtgcgccacgcc
gtgcccatgctgtcgctgggcaatgctttcgacgaagaggacgtgcgcgccttcgacaag
cgcgtggccgataccctgcgcggcgcgggcctgctgggcctggatcagcaggttgaatac
ttctgtgagctcaagctggacggcctggcgatcagcctgcgctacgaggagggcaggctg
gcccaggcggccacgcgcggcgacgggcagaccggcgaggacgtcacggccaacatccgc
accatcaaaggcgtgccgttgcgcctgcacggcgcgccgcgggtactcgaggtgcgcggc
gaagtcctgatgaaccgtgccgagttcgaacgcctgaaccgtacgcaggcagcgcgcggc
gagaaagtgttcgtcaacccgcgcaatgccgcggccggcagcctgcgccagctcgatcca
cgcatcacggcgcagcggccgttgcgtttcttcgcgtatagctggggcgaagtccatggc
ctgcccgaaggcatgccgacgcgctttgacgagcccgcgccgggcgtgcgcgtggcgtcc
acgctgccgcgcgacacgcatggcggcatgctggactggctggccgaactgggcctgccg
gtcaatctgcggcacaaccaccgagagcgcggcgccgacgggctgctggccttttacgag
cgtatcggcaagctgcgcgccgatctgccctacgacatcgacggcgtggtctacaaggtc
gacgccttgccgtcgcagcgcgtgctgggcttcgtcgcgcgcgcgccgcgctttgcgctg
gcgcacaagtttccggccgaggaggccgtcacgcaactgctcggtatcgaggtccaggtg
ggccgcacgggcgcgatcacgcccgtggcgcgcctggcgccggtgttcgtcggcggggtg
acggtcaccaacgccaccctgcacaacgaagacgagatccgccgcaaggatgtgcgcatc
ggcgataccgtgatcgtgcggcgtgccggcgatgtcatccccgaggtggtcgggccggta
ctggaaaagcggccggccgacgcgcgcgagttcgtcatgctgaccgcctgccccatctgc
ggctcggcgatcgagcgccccgagggcgaggccatcgcccgctgcacgggcgggctgttc
tgcgccgcccagcgcaagcagaccctgctgcatgccgccggccgcaaggcgctggatatc
gaaggcctgggcgaaaagctgatcgaccaactggtcgacgccgatcgcgtcaagtcgctg
gccgatatctacagcctgactgcgttcgaactggcggcgctcgaacgcatgggcaagaaa
tcggcggaaaacctggtggcggccatcgaccaggcgcgccgtccggctctgggccgcttg
ctgttcgcgctgggcatacgccatgtgggcgagacgacggcccgcgacgtggcacgccat
ttcggcagcatggaacgcatcatggacgccagcgaagaagcgctgctggccgtgcccgac
gtgggcggcgtggtggccggctcgatccggcgcttcttcgccgagccgcacaaccgcgag
atcgtcgagcagctcacgcagcagggcgtgcacccgcaagccgaggccgagcccgagggc
accagcctggccggcaagaccttcgtcctgaccggcaccatgccgaactggacccgcgat
gaggcgactcgccgtatcctggccgccggcgggaaggtcagcggttcggtctccaagaag
acggcctacctggtgacgggcgaggatgccggcagcaagctgaccaaggcccaggaactc
ggcgttccggtgctggacgaggacggcctgaaggcgctgctgggcctatag
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